Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03070 and PS417_03075 overlap by 4 nucleotides PS417_03075 and PS417_03080 are separated by 10 nucleotides PS417_03080 and PS417_03085 are separated by 10 nucleotides PS417_03085 and PS417_03090 are separated by 1 nucleotides
PS417_03070: PS417_03070 - LuxR family transcriptional regulator, at 706,536 to 707,324
_03070
PS417_03075: PS417_03075 - hypothetical protein, at 707,321 to 707,593
_03075
PS417_03080: PS417_03080 - hypothetical protein, at 707,604 to 708,314
_03080
PS417_03085: PS417_03085 - type II secretion system protein F, at 708,325 to 709,212
_03085
PS417_03090: PS417_03090 - type II secretion system protein F, at 709,214 to 710,095
_03090
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1
2 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.718 kb on + strand, within PS417_03070 at 706.719 kb on - strand, within PS417_03070 at 706.861 kb on - strand, within PS417_03070 at 706.864 kb on - strand, within PS417_03070 at 706.978 kb on - strand, within PS417_03070 at 707.005 kb on - strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.102 kb on + strand, within PS417_03070 at 707.137 kb on + strand, within PS417_03070 at 707.170 kb on - strand, within PS417_03070 at 707.215 kb on + strand, within PS417_03070 at 707.217 kb on + strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.218 kb on - strand, within PS417_03070 at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.246 kb on + strand at 707.323 kb on - strand at 707.323 kb on - strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.326 kb on + strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.327 kb on - strand at 707.329 kb on + strand at 707.329 kb on + strand at 707.330 kb on - strand at 707.394 kb on + strand, within PS417_03075 at 707.394 kb on + strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.395 kb on - strand, within PS417_03075 at 707.580 kb on + strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.581 kb on - strand at 707.605 kb on + strand at 707.767 kb on + strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.038 kb on - strand, within PS417_03080 at 708.446 kb on + strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.447 kb on - strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.649 kb on + strand, within PS417_03085 at 708.833 kb on + strand, within PS417_03085
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 706,718 + PS417_03070 0.23 +0.6 706,718 + PS417_03070 0.23 +0.0 706,718 + PS417_03070 0.23 +0.2 706,719 - PS417_03070 0.23 +1.6 706,861 - PS417_03070 0.41 +0.2 706,864 - PS417_03070 0.42 -0.2 706,978 - PS417_03070 0.56 +0.7 707,005 - PS417_03070 0.59 -0.0 707,102 + PS417_03070 0.72 +2.4 707,102 + PS417_03070 0.72 -1.4 707,137 + PS417_03070 0.76 -0.9 707,170 - PS417_03070 0.80 -1.6 707,215 + PS417_03070 0.86 +0.7 707,217 + PS417_03070 0.86 -1.3 707,218 - PS417_03070 0.86 -0.7 707,218 - PS417_03070 0.86 +0.6 707,218 - PS417_03070 0.86 +0.4 707,246 + +0.7 707,246 + -0.5 707,246 + -0.6 707,246 + -1.7 707,323 - -0.7 707,323 - +0.6 707,326 + +0.4 707,326 + -0.1 707,326 + -2.3 707,327 - -2.2 707,327 - +0.7 707,327 - -0.1 707,329 + +0.8 707,329 + +1.3 707,330 - -1.4 707,394 + PS417_03075 0.27 +0.5 707,394 + PS417_03075 0.27 +0.6 707,395 - PS417_03075 0.27 -0.5 707,395 - PS417_03075 0.27 +0.5 707,580 + +0.3 707,581 - -0.4 707,581 - +0.4 707,581 - +0.6 707,605 + +0.6 707,767 + PS417_03080 0.23 -0.7 708,038 - PS417_03080 0.61 -0.3 708,038 - PS417_03080 0.61 -1.9 708,446 + PS417_03085 0.14 -1.5 708,447 - PS417_03085 0.14 -0.2 708,447 - PS417_03085 0.14 -0.5 708,447 - PS417_03085 0.14 +0.6 708,447 - PS417_03085 0.14 +0.3 708,649 + PS417_03085 0.36 -0.3 708,649 + PS417_03085 0.36 -0.9 708,833 + PS417_03085 0.57 -0.0
Or see this region's nucleotide sequence