Strain Fitness in Pseudomonas simiae WCS417 around PS417_25370

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
5,491,537	-				+0.3
5,491,793	-		PS417_25365	0.27	-0.3
5,491,844	-		PS417_25365	0.34	-0.8
5,491,844	-		PS417_25365	0.34	+0.2
5,491,846	+		PS417_25365	0.34	+0.6
5,491,849	+		PS417_25365	0.34	+0.2
5,491,850	-		PS417_25365	0.35	+0.1
5,491,850	-		PS417_25365	0.35	-1.9
5,492,097	+		PS417_25365	0.67	+0.1
5,492,097	+		PS417_25365	0.67	+1.1
5,492,097	+		PS417_25365	0.67	+1.6
5,492,098	-		PS417_25365	0.67	+0.3
5,492,098	-		PS417_25365	0.67	-1.7
5,492,098	-		PS417_25365	0.67	+0.8
5,492,098	-		PS417_25365	0.67	+0.9
5,492,326	+				-0.3
5,492,326	+				+0.7
5,492,326	+				+0.0
5,492,327	-				-0.1
5,492,327	-				-1.0
5,492,327	-				+0.4
5,492,327	-				+1.4
5,492,471	-				+1.6
5,492,472	+				+0.2
5,492,472	+				-3.1
5,492,497	+				+0.4
5,492,497	+				-0.7
5,492,497	+				-1.2
5,492,497	+				+0.9
5,492,498	-				+0.1
5,492,498	-				-0.1
5,492,498	-				-0.3
5,492,528	+				+0.4
5,492,528	+				+0.6
5,492,528	+				-0.0
5,492,529	-				+1.7
5,492,529	-				+0.1
5,492,529	-				+0.5
5,492,529	-				-2.8
5,492,529	-				+0.2
5,492,529	-				-0.2
5,492,529	-				+1.6
5,492,529	-				-0.7
5,492,530	+				-0.5
5,492,531	-				+0.6
5,492,617	+				+0.0
5,492,688	+		PS417_25370	0.17	-0.1
5,492,724	-		PS417_25370	0.21	-2.3
5,492,724	-		PS417_25370	0.21	-0.8
5,492,806	-		PS417_25370	0.29	+0.0
5,492,806	-		PS417_25370	0.29	+0.1
5,492,884	+		PS417_25370	0.38	+0.1
5,492,884	+		PS417_25370	0.38	+0.0
5,492,885	-		PS417_25370	0.38	-0.4
5,492,901	+		PS417_25370	0.40	-1.4
5,492,923	-		PS417_25370	0.42	-0.2
5,492,989	+		PS417_25370	0.49	-0.4
5,492,989	+		PS417_25370	0.49	-0.3
5,492,990	-		PS417_25370	0.49	+0.0
5,492,991	+		PS417_25370	0.49	+0.1
5,492,992	-		PS417_25370	0.49	-0.7
5,492,992	-		PS417_25370	0.49	+1.6
5,493,028	+		PS417_25370	0.53	-1.1
5,493,138	+		PS417_25370	0.65	-0.8
5,493,191	+		PS417_25370	0.71	-0.2
5,493,192	-		PS417_25370	0.71	+0.0
5,493,192	-		PS417_25370	0.71	-0.0
5,493,258	-		PS417_25370	0.78	-1.1
5,493,279	-		PS417_25370	0.80	-1.6
5,493,587	-				+0.0
5,493,587	-				+0.0
5,493,610	-				-1.6
5,493,610	-				-0.5
5,493,707	+				+0.3
5,493,812	+				-0.1
5,493,813	-				-1.0
5,493,869	-				-0.3
5,493,885	+				-0.2
5,493,889	+				-0.1
5,493,889	+				-0.5
5,493,890	-				-0.4
5,493,890	-				+0.6
5,493,891	+				+1.2
5,493,933	+				+0.2
5,493,933	+				-0.0
5,493,934	-				-0.3
5,493,942	+				-0.5
5,493,942	+				-0.4
5,493,944	+				-0.6
5,493,944	+				+0.4
5,493,945	-				+0.6
5,493,945	-				+1.7
5,494,116	+				+1.6
5,494,116	+				+0.6
5,494,167	-				-0.1
5,494,170	-				-0.2
5,494,228	+				-0.1
5,494,228	+				-1.6
5,494,311	-				-0.6
5,494,331	-				+0.4
5,494,381	+				+1.2
5,494,382	-				-0.2
5,494,394	-				-1.0
5,494,424	+				-1.3
5,494,439	+				+0.4
5,494,440	-				-0.4
5,494,440	-				-0.3
5,494,440	-				+0.8
5,494,444	-				-2.0