Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24265 and PS417_24270 are separated by 158 nucleotides PS417_24270 and PS417_24275 are separated by 116 nucleotides PS417_24275 and PS417_24280 are separated by 241 nucleotides
PS417_24265: PS417_24265 - ABC transporter ATP-binding protein, at 5,263,417 to 5,265,081
_24265
PS417_24270: PS417_24270 - threonine transporter RhtB, at 5,265,240 to 5,265,851
_24270
PS417_24275: PS417_24275 - diguanylate phosphodiesterase, at 5,265,968 to 5,269,819
_24275
PS417_24280: PS417_24280 - serine hydroxymethyltransferase, at 5,270,061 to 5,271,314
_24280
Position (kb) 5265
5266
5267
5268
5269
5270 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 5265.071 kb on + strand at 5265.072 kb on - strand at 5265.072 kb on - strand at 5265.096 kb on - strand at 5265.096 kb on - strand at 5265.113 kb on + strand at 5265.113 kb on + strand at 5265.114 kb on - strand at 5265.114 kb on - strand at 5265.118 kb on - strand at 5265.134 kb on - strand at 5265.134 kb on - strand at 5265.137 kb on + strand at 5265.138 kb on - strand at 5265.138 kb on - strand at 5265.138 kb on - strand at 5265.138 kb on - strand at 5265.138 kb on - strand at 5265.164 kb on + strand at 5265.164 kb on + strand at 5265.165 kb on - strand at 5265.165 kb on - strand at 5265.188 kb on + strand at 5265.189 kb on - strand at 5265.195 kb on + strand at 5265.196 kb on - strand at 5265.269 kb on - strand at 5265.291 kb on - strand at 5265.305 kb on - strand, within PS417_24270 at 5265.373 kb on - strand, within PS417_24270 at 5265.469 kb on - strand, within PS417_24270 at 5265.469 kb on - strand, within PS417_24270 at 5265.486 kb on + strand, within PS417_24270 at 5265.486 kb on + strand at 5265.487 kb on - strand, within PS417_24270 at 5265.642 kb on + strand, within PS417_24270 at 5265.643 kb on - strand, within PS417_24270 at 5265.679 kb on + strand, within PS417_24270 at 5265.680 kb on - strand, within PS417_24270 at 5265.922 kb on - strand at 5265.923 kb on + strand at 5265.924 kb on - strand at 5265.924 kb on - strand at 5265.924 kb on - strand at 5266.009 kb on + strand at 5266.010 kb on - strand at 5266.010 kb on - strand at 5266.010 kb on - strand at 5266.010 kb on - strand at 5266.010 kb on - strand at 5266.010 kb on - strand at 5266.011 kb on + strand at 5266.011 kb on + strand at 5266.011 kb on + strand at 5266.070 kb on - strand at 5266.139 kb on + strand at 5266.139 kb on + strand at 5266.140 kb on - strand at 5266.140 kb on - strand at 5266.140 kb on - strand at 5266.151 kb on + strand at 5266.412 kb on + strand, within PS417_24275 at 5266.413 kb on - strand, within PS417_24275 at 5266.413 kb on - strand, within PS417_24275 at 5266.413 kb on - strand, within PS417_24275 at 5266.413 kb on - strand, within PS417_24275 at 5266.448 kb on + strand at 5266.448 kb on + strand, within PS417_24275 at 5266.448 kb on + strand, within PS417_24275 at 5266.449 kb on - strand at 5266.449 kb on - strand, within PS417_24275 at 5266.488 kb on - strand, within PS417_24275 at 5266.488 kb on - strand, within PS417_24275 at 5266.514 kb on + strand, within PS417_24275 at 5266.514 kb on + strand, within PS417_24275 at 5266.857 kb on - strand, within PS417_24275 at 5267.346 kb on + strand, within PS417_24275 at 5267.347 kb on - strand, within PS417_24275 at 5267.369 kb on + strand, within PS417_24275 at 5267.369 kb on + strand, within PS417_24275 at 5267.369 kb on + strand, within PS417_24275 at 5267.369 kb on + strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand, within PS417_24275 at 5267.370 kb on - strand at 5267.370 kb on - strand, within PS417_24275 at 5267.436 kb on - strand, within PS417_24275 at 5267.469 kb on - strand, within PS417_24275 at 5267.469 kb on - strand, within PS417_24275 at 5267.469 kb on - strand, within PS417_24275 at 5267.469 kb on - strand, within PS417_24275 at 5267.546 kb on + strand, within PS417_24275 at 5267.798 kb on + strand, within PS417_24275 at 5267.903 kb on + strand, within PS417_24275 at 5267.903 kb on + strand at 5267.904 kb on - strand, within PS417_24275 at 5268.090 kb on + strand at 5268.199 kb on + strand, within PS417_24275 at 5268.200 kb on - strand, within PS417_24275 at 5268.314 kb on + strand, within PS417_24275 at 5268.410 kb on - strand, within PS417_24275 at 5268.446 kb on + strand, within PS417_24275 at 5268.446 kb on + strand, within PS417_24275 at 5268.446 kb on + strand, within PS417_24275 at 5268.446 kb on + strand, within PS417_24275 at 5268.447 kb on - strand, within PS417_24275 at 5268.447 kb on - strand at 5268.447 kb on - strand, within PS417_24275 at 5268.447 kb on - strand, within PS417_24275 at 5268.512 kb on + strand, within PS417_24275 at 5268.513 kb on - strand, within PS417_24275 at 5268.516 kb on - strand, within PS417_24275 at 5268.679 kb on + strand, within PS417_24275 at 5268.679 kb on + strand, within PS417_24275 at 5268.813 kb on + strand, within PS417_24275 at 5268.814 kb on - strand, within PS417_24275 at 5268.814 kb on - strand, within PS417_24275 at 5268.965 kb on + strand, within PS417_24275 at 5268.966 kb on - strand, within PS417_24275 at 5269.005 kb on - strand, within PS417_24275 at 5269.094 kb on + strand, within PS417_24275 at 5269.094 kb on + strand, within PS417_24275 at 5269.095 kb on - strand, within PS417_24275 at 5269.322 kb on - strand, within PS417_24275 at 5269.743 kb on - strand at 5269.995 kb on + strand at 5269.996 kb on - strand at 5269.996 kb on - strand at 5270.004 kb on + strand at 5270.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 5,265,071 + -1.4 5,265,072 - +0.8 5,265,072 - -0.9 5,265,096 - +1.2 5,265,096 - -0.9 5,265,113 + +0.1 5,265,113 + -1.6 5,265,114 - +0.8 5,265,114 - -0.8 5,265,118 - -1.1 5,265,134 - -1.2 5,265,134 - -1.5 5,265,137 + -2.7 5,265,138 - +0.5 5,265,138 - -0.4 5,265,138 - +0.0 5,265,138 - +0.5 5,265,138 - -0.3 5,265,164 + -0.0 5,265,164 + +2.8 5,265,165 - -0.0 5,265,165 - +0.3 5,265,188 + +0.6 5,265,189 - +1.2 5,265,195 + -0.0 5,265,196 - -2.4 5,265,269 - -0.3 5,265,291 - -1.4 5,265,305 - PS417_24270 0.11 -1.0 5,265,373 - PS417_24270 0.22 -0.4 5,265,469 - PS417_24270 0.37 -0.0 5,265,469 - PS417_24270 0.37 +0.4 5,265,486 + PS417_24270 0.40 -1.6 5,265,486 + -0.0 5,265,487 - PS417_24270 0.40 -1.3 5,265,642 + PS417_24270 0.66 +0.9 5,265,643 - PS417_24270 0.66 -1.6 5,265,679 + PS417_24270 0.72 -0.2 5,265,680 - PS417_24270 0.72 +0.4 5,265,922 - -2.5 5,265,923 + -0.5 5,265,924 - -2.2 5,265,924 - -1.4 5,265,924 - -2.0 5,266,009 + -2.4 5,266,010 - -3.3 5,266,010 - -2.8 5,266,010 - -2.8 5,266,010 - -2.2 5,266,010 - -1.8 5,266,010 - -2.1 5,266,011 + -2.7 5,266,011 + -3.1 5,266,011 + +0.2 5,266,070 - -1.4 5,266,139 + -3.9 5,266,139 + -2.1 5,266,140 - -2.7 5,266,140 - -1.0 5,266,140 - -2.2 5,266,151 + -0.8 5,266,412 + PS417_24275 0.12 -0.8 5,266,413 - PS417_24275 0.12 -1.2 5,266,413 - PS417_24275 0.12 -3.9 5,266,413 - PS417_24275 0.12 -2.7 5,266,413 - PS417_24275 0.12 -1.2 5,266,448 + +0.6 5,266,448 + PS417_24275 0.12 -1.0 5,266,448 + PS417_24275 0.12 -1.1 5,266,449 - -0.0 5,266,449 - PS417_24275 0.12 -1.2 5,266,488 - PS417_24275 0.13 -1.9 5,266,488 - PS417_24275 0.13 -1.7 5,266,514 + PS417_24275 0.14 -0.0 5,266,514 + PS417_24275 0.14 -1.6 5,266,857 - PS417_24275 0.23 -2.7 5,267,346 + PS417_24275 0.36 -2.9 5,267,347 - PS417_24275 0.36 -1.9 5,267,369 + PS417_24275 0.36 -2.2 5,267,369 + PS417_24275 0.36 -2.3 5,267,369 + PS417_24275 0.36 -3.0 5,267,369 + PS417_24275 0.36 -3.3 5,267,370 - PS417_24275 0.36 -2.2 5,267,370 - PS417_24275 0.36 -1.6 5,267,370 - PS417_24275 0.36 -2.7 5,267,370 - PS417_24275 0.36 -1.8 5,267,370 - PS417_24275 0.36 -2.3 5,267,370 - PS417_24275 0.36 -2.3 5,267,370 - PS417_24275 0.36 -3.6 5,267,370 - PS417_24275 0.36 -0.3 5,267,370 - -1.2 5,267,370 - PS417_24275 0.36 -2.6 5,267,436 - PS417_24275 0.38 -2.9 5,267,469 - PS417_24275 0.39 -3.9 5,267,469 - PS417_24275 0.39 -3.2 5,267,469 - PS417_24275 0.39 -1.2 5,267,469 - PS417_24275 0.39 -3.3 5,267,546 + PS417_24275 0.41 -2.9 5,267,798 + PS417_24275 0.48 -2.3 5,267,903 + PS417_24275 0.50 -2.4 5,267,903 + -0.4 5,267,904 - PS417_24275 0.50 -3.1 5,268,090 + -0.4 5,268,199 + PS417_24275 0.58 +0.3 5,268,200 - PS417_24275 0.58 -1.7 5,268,314 + PS417_24275 0.61 -1.6 5,268,410 - PS417_24275 0.63 -1.8 5,268,446 + PS417_24275 0.64 -2.2 5,268,446 + PS417_24275 0.64 -2.2 5,268,446 + PS417_24275 0.64 -3.0 5,268,446 + PS417_24275 0.64 -2.1 5,268,447 - PS417_24275 0.64 -2.3 5,268,447 - -1.2 5,268,447 - PS417_24275 0.64 +0.1 5,268,447 - PS417_24275 0.64 -2.7 5,268,512 + PS417_24275 0.66 -3.3 5,268,513 - PS417_24275 0.66 -1.4 5,268,516 - PS417_24275 0.66 -2.0 5,268,679 + PS417_24275 0.70 -2.2 5,268,679 + PS417_24275 0.70 -1.4 5,268,813 + PS417_24275 0.74 -3.0 5,268,814 - PS417_24275 0.74 -1.7 5,268,814 - PS417_24275 0.74 -2.7 5,268,965 + PS417_24275 0.78 -1.6 5,268,966 - PS417_24275 0.78 -3.2 5,269,005 - PS417_24275 0.79 -2.0 5,269,094 + PS417_24275 0.81 +1.6 5,269,094 + PS417_24275 0.81 -0.4 5,269,095 - PS417_24275 0.81 -1.4 5,269,322 - PS417_24275 0.87 -3.8 5,269,743 - -5.8 5,269,995 + -0.2 5,269,996 - +0.6 5,269,996 - -1.5 5,270,004 + +0.5 5,270,004 + -0.3
Or see this region's nucleotide sequence