Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24180 and PS417_24185 are separated by 880 nucleotides PS417_24185 and PS417_24190 are separated by 201 nucleotides
PS417_24180: PS417_24180 - hypothetical protein, at 5,243,762 to 5,245,837
_24180
PS417_24185: PS417_24185 - hypothetical protein, at 5,246,718 to 5,246,987
_24185
PS417_24190: PS417_24190 - AraC family transcriptional regulator, at 5,247,189 to 5,248,043
_24190
Position (kb) 5246
5247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5245.733 kb on + strand at 5245.734 kb on - strand at 5245.763 kb on + strand at 5245.763 kb on + strand at 5245.884 kb on - strand at 5245.889 kb on - strand at 5245.932 kb on + strand at 5246.033 kb on + strand at 5246.079 kb on + strand at 5246.096 kb on + strand at 5246.149 kb on + strand at 5246.166 kb on + strand at 5246.178 kb on + strand at 5246.179 kb on - strand at 5246.179 kb on - strand at 5246.277 kb on + strand at 5246.388 kb on + strand at 5246.394 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.416 kb on + strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.417 kb on - strand at 5246.518 kb on + strand at 5246.519 kb on - strand at 5246.543 kb on + strand at 5246.583 kb on + strand at 5246.583 kb on + strand at 5246.583 kb on + strand at 5246.601 kb on + strand at 5246.601 kb on + strand at 5246.668 kb on - strand at 5246.678 kb on + strand at 5246.678 kb on + strand at 5246.678 kb on + strand at 5246.679 kb on - strand at 5246.704 kb on + strand at 5246.704 kb on + strand at 5246.705 kb on - strand at 5246.705 kb on - strand at 5246.792 kb on + strand, within PS417_24185 at 5246.793 kb on - strand, within PS417_24185 at 5246.793 kb on - strand, within PS417_24185 at 5246.808 kb on + strand, within PS417_24185 at 5246.808 kb on + strand, within PS417_24185 at 5247.078 kb on - strand at 5247.274 kb on + strand at 5247.275 kb on - strand, within PS417_24190 at 5247.332 kb on - strand, within PS417_24190 at 5247.361 kb on - strand, within PS417_24190 at 5247.361 kb on - strand, within PS417_24190 at 5247.425 kb on - strand, within PS417_24190 at 5247.455 kb on - strand, within PS417_24190 at 5247.488 kb on + strand, within PS417_24190 at 5247.489 kb on - strand, within PS417_24190 at 5247.489 kb on - strand, within PS417_24190 at 5247.492 kb on + strand, within PS417_24190 at 5247.492 kb on + strand, within PS417_24190 at 5247.493 kb on - strand, within PS417_24190 at 5247.493 kb on - strand, within PS417_24190 at 5247.625 kb on + strand, within PS417_24190 at 5247.675 kb on + strand, within PS417_24190 at 5247.676 kb on - strand, within PS417_24190 at 5247.676 kb on - strand, within PS417_24190 at 5247.786 kb on - strand, within PS417_24190 at 5247.940 kb on + strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190 at 5247.941 kb on - strand, within PS417_24190
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 5,245,733 + +0.4 5,245,734 - +0.1 5,245,763 + -1.7 5,245,763 + -0.0 5,245,884 - -0.2 5,245,889 - +0.4 5,245,932 + -0.0 5,246,033 + -1.2 5,246,079 + +0.8 5,246,096 + -0.6 5,246,149 + +0.8 5,246,166 + +0.5 5,246,178 + +0.0 5,246,179 - -0.0 5,246,179 - +2.9 5,246,277 + +1.7 5,246,388 + -0.3 5,246,394 + -2.4 5,246,416 + +0.8 5,246,416 + -0.2 5,246,416 + +0.7 5,246,416 + +0.0 5,246,416 + +0.3 5,246,417 - +0.6 5,246,417 - +0.6 5,246,417 - -1.0 5,246,417 - +1.6 5,246,417 - -0.3 5,246,417 - -3.5 5,246,417 - +1.1 5,246,417 - +0.2 5,246,518 + +0.6 5,246,519 - -1.3 5,246,543 + -0.7 5,246,583 + +0.8 5,246,583 + +2.1 5,246,583 + +0.3 5,246,601 + -0.9 5,246,601 + -0.9 5,246,668 - -0.3 5,246,678 + +0.2 5,246,678 + +0.3 5,246,678 + +2.1 5,246,679 - -0.7 5,246,704 + +0.2 5,246,704 + +0.5 5,246,705 - +0.6 5,246,705 - -1.1 5,246,792 + PS417_24185 0.27 +1.4 5,246,793 - PS417_24185 0.28 +0.0 5,246,793 - PS417_24185 0.28 -0.2 5,246,808 + PS417_24185 0.33 +0.9 5,246,808 + PS417_24185 0.33 -1.6 5,247,078 - -0.2 5,247,274 + -0.2 5,247,275 - PS417_24190 0.10 +0.5 5,247,332 - PS417_24190 0.17 -0.3 5,247,361 - PS417_24190 0.20 +0.7 5,247,361 - PS417_24190 0.20 +0.2 5,247,425 - PS417_24190 0.28 +0.2 5,247,455 - PS417_24190 0.31 +0.6 5,247,488 + PS417_24190 0.35 +0.1 5,247,489 - PS417_24190 0.35 +0.5 5,247,489 - PS417_24190 0.35 -0.0 5,247,492 + PS417_24190 0.35 +0.1 5,247,492 + PS417_24190 0.35 +0.7 5,247,493 - PS417_24190 0.36 +1.1 5,247,493 - PS417_24190 0.36 -0.0 5,247,625 + PS417_24190 0.51 -0.7 5,247,675 + PS417_24190 0.57 +1.7 5,247,676 - PS417_24190 0.57 -1.7 5,247,676 - PS417_24190 0.57 -0.6 5,247,786 - PS417_24190 0.70 +0.0 5,247,940 + PS417_24190 0.88 +0.4 5,247,941 - PS417_24190 0.88 -0.1 5,247,941 - PS417_24190 0.88 +0.7 5,247,941 - PS417_24190 0.88 +1.5 5,247,941 - PS417_24190 0.88 +0.3 5,247,941 - PS417_24190 0.88 -0.7 5,247,941 - PS417_24190 0.88 -0.9 5,247,941 - PS417_24190 0.88 -0.7
Or see this region's nucleotide sequence