Strain Fitness in Pseudomonas simiae WCS417 around PS417_02320

Experiment: P. simiae ORA MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02310 and PS417_02315 overlap by 8 nucleotidesPS417_02315 and PS417_02320 are separated by 40 nucleotidesPS417_02320 and PS417_02325 are separated by 41 nucleotidesPS417_02325 and PS417_02330 overlap by 4 nucleotides PS417_02310: PS417_02310 - heptose 1-phosphate adenyltransferase, at 528,302 to 529,726 _02310 PS417_02315: PS417_02315 - NAD-dependent dehydratase, at 529,719 to 530,645 _02315 PS417_02320: PS417_02320 - metal ABC transporter ATPase, at 530,686 to 531,645 _02320 PS417_02325: PS417_02325 - aldo/keto reductase, at 531,687 to 532,499 _02325 PS417_02330: PS417_02330 - FAD-dependent oxidoreductase, at 532,496 to 533,671 _02330 Position (kb) 530 531 532Strain fitness (log2 ratio) -2 -1 0 1at 530.874 kb on + strand, within PS417_02320at 530.875 kb on - strand, within PS417_02320at 530.910 kb on - strand, within PS417_02320at 530.951 kb on + strand, within PS417_02320at 530.952 kb on - strand, within PS417_02320at 531.069 kb on - strand, within PS417_02320at 531.201 kb on - strand, within PS417_02320

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1
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530,874 + PS417_02320 0.20 -0.5
530,875 - PS417_02320 0.20 -1.6
530,910 - PS417_02320 0.23 -0.0
530,951 + PS417_02320 0.28 -2.0
530,952 - PS417_02320 0.28 -1.8
531,069 - PS417_02320 0.40 -0.4
531,201 - PS417_02320 0.54 -0.2

Or see this region's nucleotide sequence