Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02180 and PS417_02185 are separated by 203 nucleotides PS417_02185 and PS417_02190 are separated by 21 nucleotides PS417_02190 and PS417_02200 are separated by 134 nucleotides
PS417_02180: PS417_02180 - proline:sodium symporter PutP, at 491,461 to 492,945
_02180
PS417_02185: PS417_02185 - type IV secretion protein Rhs, at 493,149 to 495,125
_02185
PS417_02190: PS417_02190 - hypothetical protein, at 495,147 to 495,830
_02190
PS417_02200: PS417_02200 - lactate dehydrogenase, at 495,965 to 496,801
_02200
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -2
-1
0
1 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.343 kb on + strand, within PS417_02180 at 492.895 kb on - strand at 492.944 kb on - strand at 492.944 kb on - strand at 493.026 kb on - strand at 493.178 kb on + strand at 493.217 kb on - strand at 493.470 kb on - strand, within PS417_02185 at 493.470 kb on - strand, within PS417_02185 at 493.737 kb on + strand, within PS417_02185 at 493.738 kb on - strand, within PS417_02185 at 493.739 kb on + strand, within PS417_02185 at 493.799 kb on - strand, within PS417_02185 at 493.834 kb on - strand, within PS417_02185 at 493.948 kb on - strand, within PS417_02185 at 494.483 kb on + strand, within PS417_02185 at 494.599 kb on - strand, within PS417_02185 at 494.773 kb on + strand, within PS417_02185 at 494.773 kb on + strand, within PS417_02185 at 494.839 kb on + strand, within PS417_02185 at 495.307 kb on - strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.529 kb on + strand, within PS417_02190 at 495.530 kb on - strand, within PS417_02190 at 495.625 kb on + strand, within PS417_02190 at 495.637 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.720 kb on + strand, within PS417_02190 at 495.763 kb on - strand at 495.937 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 492,343 + PS417_02180 0.59 -0.9 492,343 + PS417_02180 0.59 -0.7 492,343 + PS417_02180 0.59 +0.3 492,895 - -0.0 492,944 - +0.6 492,944 - +1.3 493,026 - +0.2 493,178 + +0.5 493,217 - +1.5 493,470 - PS417_02185 0.16 -0.5 493,470 - PS417_02185 0.16 -2.6 493,737 + PS417_02185 0.30 -0.7 493,738 - PS417_02185 0.30 -1.4 493,739 + PS417_02185 0.30 -1.6 493,799 - PS417_02185 0.33 -1.2 493,834 - PS417_02185 0.35 -1.3 493,948 - PS417_02185 0.40 -1.3 494,483 + PS417_02185 0.67 -1.0 494,599 - PS417_02185 0.73 +0.1 494,773 + PS417_02185 0.82 -1.1 494,773 + PS417_02185 0.82 +0.1 494,839 + PS417_02185 0.85 +0.7 495,307 - PS417_02190 0.23 +1.1 495,529 + PS417_02190 0.56 +0.1 495,529 + PS417_02190 0.56 +0.4 495,529 + PS417_02190 0.56 -0.3 495,529 + PS417_02190 0.56 -0.9 495,530 - PS417_02190 0.56 +0.3 495,625 + PS417_02190 0.70 -1.3 495,637 + PS417_02190 0.72 +0.3 495,720 + PS417_02190 0.84 +0.2 495,720 + PS417_02190 0.84 -1.3 495,763 - +1.7 495,937 - +0.8
Or see this region's nucleotide sequence