Strain Fitness in Pseudomonas simiae WCS417 around PS417_20600

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
4,475,876	+				-1.7
4,475,876	+				+0.5
4,475,877	-				-4.3
4,475,877	-				-0.3
4,475,886	-				-0.7
4,475,886	-				-0.4
4,476,048	+		PS417_20595	0.14	-0.3
4,476,051	-		PS417_20595	0.14	-0.5
4,476,059	+		PS417_20595	0.15	-0.4
4,476,081	+		PS417_20595	0.18	-0.4
4,476,083	+		PS417_20595	0.18	-0.3
4,476,083	+		PS417_20595	0.18	-0.9
4,476,083	+		PS417_20595	0.18	-1.4
4,476,084	-		PS417_20595	0.18	-0.3
4,476,192	+		PS417_20595	0.33	+0.0
4,476,231	-		PS417_20595	0.38	-1.4
4,476,428	+		PS417_20595	0.64	-0.8
4,476,428	+		PS417_20595	0.64	+0.5
4,476,428	+		PS417_20595	0.64	-3.4
4,476,446	-				-1.7
4,476,474	-		PS417_20595	0.71	-1.4
4,476,610	+		PS417_20595	0.89	+0.1
4,476,610	+		PS417_20595	0.89	-0.2
4,476,611	-		PS417_20595	0.89	+1.0
4,476,611	-		PS417_20595	0.89	-0.6
4,476,652	+				-0.5
4,476,672	+				-0.2
4,476,672	+				+1.5
4,476,679	+				-1.1
4,476,691	+				-0.8
4,476,747	-				-0.5
4,476,770	+				+0.1
4,476,770	+				+0.8
4,476,771	-				+0.4
4,476,821	+				-0.8
4,476,823	+				-0.5
4,476,871	-				-1.7
4,477,065	+		PS417_20600	0.20	+1.1
4,477,093	-				-0.3
4,477,093	-		PS417_20600	0.22	-0.3
4,477,192	+		PS417_20600	0.30	+0.5
4,477,228	+		PS417_20600	0.34	+0.7
4,477,229	-		PS417_20600	0.34	-0.5
4,477,239	+		PS417_20600	0.34	+0.3
4,477,316	+		PS417_20600	0.41	+0.2
4,477,316	+		PS417_20600	0.41	-1.9
4,477,316	+		PS417_20600	0.41	+0.0
4,477,316	+		PS417_20600	0.41	-0.3
4,477,317	-		PS417_20600	0.41	-0.3
4,477,317	-		PS417_20600	0.41	+0.5
4,477,346	+		PS417_20600	0.44	+0.2
4,477,355	+		PS417_20600	0.44	+0.2
4,477,438	-		PS417_20600	0.51	+1.0
4,477,485	-		PS417_20600	0.55	+0.2
4,477,503	-		PS417_20600	0.57	+0.5
4,477,507	-		PS417_20600	0.57	-0.8
4,477,562	+		PS417_20600	0.62	-2.7
4,477,602	+		PS417_20600	0.65	-0.5
4,477,603	-		PS417_20600	0.65	+0.5
4,477,606	-				-1.5
4,477,606	-		PS417_20600	0.66	-0.1
4,477,662	-		PS417_20600	0.71	-0.4
4,477,918	+				-0.6
4,477,955	+				-1.3
4,477,956	-				-1.1
4,478,000	+				+0.3
4,478,000	+				+0.4
4,478,001	-				+0.1
4,478,009	+				+1.3
4,478,191	+		PS417_20605	0.12	+0.2
4,478,192	-		PS417_20605	0.12	-2.1
4,478,221	+		PS417_20605	0.14	+0.1
4,478,343	+		PS417_20605	0.23	-0.1
4,478,358	-		PS417_20605	0.24	+0.3
4,478,452	+		PS417_20605	0.30	-0.6
4,478,453	-		PS417_20605	0.30	-0.1
4,478,461	+		PS417_20605	0.31	+1.0
4,478,587	+		PS417_20605	0.40	+0.4
4,478,588	-		PS417_20605	0.40	+0.5
4,478,589	+		PS417_20605	0.40	-0.7
4,478,590	-		PS417_20605	0.40	+0.1
4,478,590	-		PS417_20605	0.40	-0.8
4,478,591	+		PS417_20605	0.40	-0.1
4,478,591	+		PS417_20605	0.40	+0.2
4,478,591	+		PS417_20605	0.40	-3.2
4,478,591	+		PS417_20605	0.40	+1.2
4,478,591	+		PS417_20605	0.40	+0.2
4,478,592	-		PS417_20605	0.40	+0.5
4,478,592	-		PS417_20605	0.40	-0.5
4,478,626	-				+3.1
4,478,626	-		PS417_20605	0.42	+1.3
4,478,626	-		PS417_20605	0.42	-0.2
4,478,626	-		PS417_20605	0.42	-0.2
4,478,626	-		PS417_20605	0.42	-0.2
4,478,707	-		PS417_20605	0.48	-0.5
4,478,735	+		PS417_20605	0.50	+0.2
4,478,768	+		PS417_20605	0.52	+0.5
4,479,005	-		PS417_20605	0.69	-2.1