Strain Fitness in Pseudomonas simiae WCS417 around PS417_20570

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
4,464,674	+				+0.8
4,464,786	-				-0.1
4,464,989	+		PS417_20560	0.83	-0.5
4,464,990	-		PS417_20560	0.84	+0.6
4,465,127	+		PS417_20565	0.17	-0.7
4,465,128	-		PS417_20565	0.17	-0.1
4,465,208	+		PS417_20565	0.30	+0.1
4,465,208	+		PS417_20565	0.30	-1.2
4,465,209	-		PS417_20565	0.30	-1.8
4,465,209	-		PS417_20565	0.30	+1.5
4,465,209	-		PS417_20565	0.30	-0.7
4,465,209	-				+0.5
4,465,209	-		PS417_20565	0.30	-0.1
4,465,385	-		PS417_20565	0.59	+0.9
4,465,385	-		PS417_20565	0.59	+0.2
4,465,529	-		PS417_20565	0.82	-0.5
4,465,529	-		PS417_20565	0.82	-0.7
4,465,555	+		PS417_20565	0.87	-0.8
4,465,556	-		PS417_20565	0.87	-0.5
4,465,556	-		PS417_20565	0.87	-0.9
4,465,746	+				-0.2
4,465,747	-				-1.5
4,465,783	+		PS417_20570	0.11	-2.2
4,465,791	+		PS417_20570	0.12	-0.9
4,465,792	-		PS417_20570	0.12	-1.7
4,465,792	-		PS417_20570	0.12	-1.6
4,465,792	-		PS417_20570	0.12	-0.3
4,465,792	-		PS417_20570	0.12	-0.5
4,465,792	-		PS417_20570	0.12	-0.8
4,465,792	-		PS417_20570	0.12	-1.0
4,465,795	+		PS417_20570	0.12	-2.8
4,465,796	-		PS417_20570	0.13	-2.0
4,466,688	+				+0.6
4,466,688	+				-0.0
4,466,689	-				-0.3
4,466,689	-				-1.1
4,466,689	-				-0.9
4,466,742	+				-0.8
4,466,742	+				-0.3
4,466,770	+				-0.2
4,466,788	+				+0.5
4,466,808	+				-2.1
4,466,808	+				-1.8
4,466,808	+				-1.0
4,466,809	-				+0.2
4,466,809	-				-0.1
4,466,809	-				-1.8
4,466,814	+				-0.1
4,466,830	+				-0.2
4,466,830	+				-1.1
4,466,830	+				-0.7
4,466,830	+				-1.0
4,466,831	-				-0.1
4,466,831	-				-1.1
4,466,831	-				-0.1
4,466,831	-				+0.6
4,466,832	+				-1.2
4,466,832	+				+0.1
4,466,832	+				-0.1
4,466,832	+				+1.0
4,466,836	+				-0.7
4,466,918	+				-0.5
4,466,918	+				-0.8
4,466,918	+				+0.4
4,466,918	+				-1.3
4,466,969	+				-0.5
4,466,969	+				-0.0
4,467,051	+				-0.7
4,467,051	+				-1.4
4,467,051	+				-0.1
4,467,051	+				-0.1
4,467,051	+				-0.5
4,467,051	+				+1.5
4,467,051	+				-0.4
4,467,051	+				-0.1
4,467,051	+				-3.2
4,467,051	+				-0.2
4,467,051	+				-2.2
4,467,051	+				-0.8
4,467,052	-				-0.2
4,467,052	-				-0.4
4,467,052	-				+2.0
4,467,052	-				-0.2
4,467,052	-				-0.6
4,467,052	-				-0.7
4,467,052	-				+0.3
4,467,154	+				-0.9
4,467,301	-				-0.0
4,467,451	-				-1.1
4,467,708	-				+1.5