Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02015 and PS417_02020 are separated by 123 nucleotides
PS417_02015: PS417_02015 - membrane protein, at 450,779 to 452,053
_02015
PS417_02020: PS417_02020 - LysR family transcriptional regulator, at 452,177 to 453,070
_02020
Position (kb) 452
453
454 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.182 kb on + strand, within PS417_02015 at 451.183 kb on - strand, within PS417_02015 at 451.187 kb on - strand, within PS417_02015 at 451.197 kb on + strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.198 kb on - strand, within PS417_02015 at 451.240 kb on - strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.269 kb on + strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.270 kb on - strand, within PS417_02015 at 451.554 kb on + strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.555 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015 at 451.606 kb on - strand, within PS417_02015 at 451.665 kb on - strand, within PS417_02015 at 451.891 kb on - strand, within PS417_02015 at 451.971 kb on + strand at 451.994 kb on + strand at 451.994 kb on + strand at 451.995 kb on - strand at 452.103 kb on + strand at 452.103 kb on + strand at 452.103 kb on + strand at 452.104 kb on - strand at 452.105 kb on + strand at 452.105 kb on + strand at 452.105 kb on + strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.106 kb on - strand at 452.130 kb on - strand at 452.284 kb on - strand, within PS417_02020 at 452.418 kb on + strand, within PS417_02020 at 452.419 kb on - strand, within PS417_02020 at 452.486 kb on - strand, within PS417_02020 at 452.793 kb on - strand, within PS417_02020 at 452.922 kb on - strand, within PS417_02020 at 452.951 kb on + strand, within PS417_02020 at 452.951 kb on + strand, within PS417_02020 at 452.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 451,182 + PS417_02015 0.32 +0.7 451,182 + PS417_02015 0.32 +0.2 451,182 + PS417_02015 0.32 +1.7 451,182 + PS417_02015 0.32 -1.5 451,183 - PS417_02015 0.32 +0.7 451,187 - PS417_02015 0.32 +0.8 451,197 + PS417_02015 0.33 -0.9 451,198 - PS417_02015 0.33 -0.7 451,198 - PS417_02015 0.33 -0.2 451,240 - PS417_02015 0.36 -0.9 451,269 + PS417_02015 0.38 +0.1 451,269 + PS417_02015 0.38 +0.5 451,270 - PS417_02015 0.39 +0.0 451,270 - PS417_02015 0.39 -0.1 451,554 + PS417_02015 0.61 -0.9 451,555 - PS417_02015 0.61 -2.2 451,555 - PS417_02015 0.61 +2.7 451,555 - PS417_02015 0.61 +0.1 451,555 - PS417_02015 0.61 -0.9 451,606 - PS417_02015 0.65 +0.5 451,606 - PS417_02015 0.65 +0.5 451,665 - PS417_02015 0.69 +1.5 451,891 - PS417_02015 0.87 -3.0 451,971 + +0.2 451,994 + +0.7 451,994 + -0.1 451,995 - +1.5 452,103 + +1.7 452,103 + -2.2 452,103 + -0.6 452,104 - +0.1 452,105 + -0.5 452,105 + +1.5 452,105 + +0.0 452,106 - +0.2 452,106 - +0.2 452,106 - -0.6 452,106 - -1.1 452,106 - +0.3 452,130 - +0.9 452,284 - PS417_02020 0.12 -0.8 452,418 + PS417_02020 0.27 -1.0 452,419 - PS417_02020 0.27 +0.7 452,486 - PS417_02020 0.35 -0.9 452,793 - PS417_02020 0.69 +1.3 452,922 - PS417_02020 0.83 -1.3 452,951 + PS417_02020 0.87 -0.4 452,951 + PS417_02020 0.87 -1.4 452,989 - +0.7
Or see this region's nucleotide sequence