Strain Fitness in Pseudomonas simiae WCS417 around PS417_19630

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
4,268,162	+				+1.2
4,268,178	-				-3.2
4,268,253	-				-1.5
4,268,256	+				-4.1
4,268,256	+				+0.5
4,268,256	+				-3.3
4,268,257	-				-0.5
4,268,257	-				-1.8
4,268,257	-				+0.5
4,268,257	-				-4.0
4,268,257	-				-6.7
4,268,257	-				-3.2
4,268,257	-				-5.4
4,268,611	+		PS417_19625	0.40	-2.5
4,268,611	+		PS417_19625	0.40	-1.1
4,268,934	-		PS417_19625	0.76	-3.6
4,268,996	+		PS417_19625	0.83	-0.5
4,268,997	-		PS417_19625	0.84	-2.2
4,269,153	+				-4.2
4,269,154	-				-1.5
4,269,222	-				+1.5
4,269,222	-		PS417_19630	0.12	-2.0
4,269,258	+		PS417_19630	0.18	-3.0
4,269,592	+		PS417_19630	0.68	+0.5
4,269,639	+		PS417_19630	0.76	-2.8
4,269,640	-		PS417_19630	0.76	-2.3
4,269,759	+				-2.0
4,269,760	-				-3.0
4,269,760	-				-3.7
4,269,894	+		PS417_19635	0.15	-3.4
4,269,895	-		PS417_19635	0.15	-1.1
4,269,895	-		PS417_19635	0.15	+0.1
4,269,895	-		PS417_19635	0.15	-1.5
4,270,064	+		PS417_19635	0.33	-1.8
4,270,064	+		PS417_19635	0.33	-3.7
4,270,065	-		PS417_19635	0.33	-0.8
4,270,065	-		PS417_19635	0.33	-1.8
4,270,065	-		PS417_19635	0.33	-0.8
4,270,065	-		PS417_19635	0.33	-1.8
4,270,065	-		PS417_19635	0.33	-1.5
4,270,065	-		PS417_19635	0.33	-1.2
4,270,170	-		PS417_19635	0.45	-1.7
4,270,170	-		PS417_19635	0.45	-1.9
4,270,243	+		PS417_19635	0.53	-1.9
4,270,243	+		PS417_19635	0.53	-2.7
4,270,243	+		PS417_19635	0.53	-2.8
4,270,244	-		PS417_19635	0.53	-0.7
4,270,510	-		PS417_19635	0.82	-1.1
4,270,619	+				-0.5
4,270,619	+				-2.1
4,270,619	+				-1.3
4,270,619	+				-2.0
4,270,620	-				-2.0
4,270,620	-				-1.2
4,270,688	-				-1.1
4,270,775	+				-2.5
4,270,775	+				-1.8
4,270,775	+				+0.5