Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01530 and PS417_01535 are separated by 141 nucleotides PS417_01535 and PS417_01540 are separated by 103 nucleotides PS417_01540 and PS417_01545 overlap by 4 nucleotides PS417_01545 and PS417_01550 overlap by 4 nucleotides
PS417_01530: PS417_01530 - hypothetical protein, at 339,518 to 340,075
_01530
PS417_01535: PS417_01535 - tRNA-Phe, at 340,217 to 340,292
_01535
PS417_01540: PS417_01540 - iron transporter, at 340,396 to 340,668
_01540
PS417_01545: PS417_01545 - adenine glycosylase, at 340,665 to 341,732
_01545
PS417_01550: PS417_01550 - cell envelope biogenesis protein AsmA, at 341,729 to 343,939
_01550
Position (kb) 340
341
342 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 339.680 kb on + strand, within PS417_01530 at 339.681 kb on - strand, within PS417_01530 at 339.845 kb on - strand, within PS417_01530 at 339.892 kb on + strand, within PS417_01530 at 339.920 kb on + strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.930 kb on - strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.932 kb on + strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 339.933 kb on - strand, within PS417_01530 at 340.018 kb on - strand, within PS417_01530 at 340.035 kb on + strand at 340.036 kb on - strand at 340.213 kb on - strand at 340.370 kb on - strand at 340.760 kb on + strand at 340.760 kb on + strand at 340.762 kb on + strand at 340.763 kb on - strand at 340.763 kb on - strand at 340.763 kb on - strand at 341.485 kb on + strand, within PS417_01545 at 341.485 kb on + strand, within PS417_01545 at 341.486 kb on - strand, within PS417_01545 at 341.486 kb on - strand, within PS417_01545 at 341.514 kb on + strand, within PS417_01545 at 341.514 kb on + strand, within PS417_01545 at 341.581 kb on + strand, within PS417_01545 at 341.582 kb on - strand, within PS417_01545 at 341.693 kb on - strand at 341.986 kb on + strand, within PS417_01550 at 342.225 kb on - strand, within PS417_01550 at 342.225 kb on - strand, within PS417_01550 at 342.462 kb on + strand, within PS417_01550 at 342.462 kb on + strand, within PS417_01550 at 342.463 kb on - strand, within PS417_01550
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 339,680 + PS417_01530 0.29 -1.4 339,681 - PS417_01530 0.29 -0.7 339,845 - PS417_01530 0.59 +1.7 339,892 + PS417_01530 0.67 -0.0 339,920 + PS417_01530 0.72 -0.2 339,930 - PS417_01530 0.74 +0.2 339,930 - PS417_01530 0.74 +0.0 339,930 - PS417_01530 0.74 +0.3 339,932 + PS417_01530 0.74 +0.2 339,932 + PS417_01530 0.74 +0.6 339,933 - PS417_01530 0.74 +1.1 339,933 - PS417_01530 0.74 -0.4 339,933 - PS417_01530 0.74 -0.3 340,018 - PS417_01530 0.90 -0.1 340,035 + -0.5 340,036 - +0.9 340,213 - +2.3 340,370 - +0.8 340,760 + +1.7 340,760 + +0.1 340,762 + -1.1 340,763 - -1.3 340,763 - +0.3 340,763 - -0.5 341,485 + PS417_01545 0.77 -0.4 341,485 + PS417_01545 0.77 -2.9 341,486 - PS417_01545 0.77 -2.0 341,486 - PS417_01545 0.77 +0.7 341,514 + PS417_01545 0.79 -0.8 341,514 + PS417_01545 0.79 -0.0 341,581 + PS417_01545 0.86 -1.8 341,582 - PS417_01545 0.86 +0.1 341,693 - +0.4 341,986 + PS417_01550 0.12 -1.5 342,225 - PS417_01550 0.22 -0.7 342,225 - PS417_01550 0.22 +0.1 342,462 + PS417_01550 0.33 -0.1 342,462 + PS417_01550 0.33 +0.7 342,463 - PS417_01550 0.33 +0.7
Or see this region's nucleotide sequence