Strain Fitness in Pseudomonas simiae WCS417 around PS417_12910

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
2,824,325	+				-0.1
2,824,388	-				+1.1
2,824,388	-				-1.9
2,824,390	+				+0.2
2,824,390	+				+0.3
2,824,391	-				+0.5
2,824,403	-				-0.3
2,824,423	+				+1.7
2,824,434	-				-1.4
2,824,443	+				-2.3
2,824,444	-				+0.2
2,824,444	-				-0.5
2,824,448	-				-0.5
2,824,448	-				-0.6
2,824,475	+				+0.4
2,824,475	+				-0.2
2,824,475	+				-0.4
2,824,476	-				+1.3
2,824,476	-				-0.3
2,824,476	-				-2.4
2,824,476	-				-0.3
2,824,476	-				+0.0
2,824,477	+				-0.5
2,824,477	+				+0.8
2,824,477	+				-0.7
2,824,477	+				-0.3
2,824,478	-				-1.7
2,824,478	-				-1.7
2,824,604	+				-0.4
2,824,605	-				-0.7
2,824,630	+				+1.5
2,824,631	-				+0.3
2,824,636	+				-1.1
2,824,636	+				-0.9
2,824,636	+				-0.5
2,824,664	+				+1.3
2,824,987	+		PS417_12910	0.35	+0.3
2,824,988	-		PS417_12910	0.35	-1.4
2,825,009	-		PS417_12910	0.37	-2.4
2,825,009	-		PS417_12910	0.37	-0.0
2,825,009	-		PS417_12910	0.37	-1.5
2,825,009	-				+0.3
2,825,762	-				+1.0
2,825,783	-				+0.3
2,825,783	-				-0.7
2,826,083	+		PS417_12915	0.49	-0.0
2,826,084	-		PS417_12915	0.49	-1.7
2,826,289	-		PS417_12915	0.82	-1.1
2,826,289	-		PS417_12915	0.82	-2.2
2,826,384	-				+0.6
2,826,389	+				+0.1
2,826,389	+				+0.3
2,826,398	+				+0.8
2,826,539	+		PS417_12920	0.40	+0.0
2,826,539	+		PS417_12920	0.40	-2.5
2,826,539	+		PS417_12920	0.40	+0.0
2,826,540	-		PS417_12920	0.40	-0.3
2,826,540	-		PS417_12920	0.40	+0.5
2,826,540	-		PS417_12920	0.40	-0.4
2,826,598	+		PS417_12920	0.55	+0.4
2,826,689	+		PS417_12920	0.79	-1.5
2,826,690	-		PS417_12920	0.79	-0.2
2,826,690	-		PS417_12920	0.79	+0.2
2,826,690	-		PS417_12920	0.79	-0.4
2,826,690	-		PS417_12920	0.79	-0.8