Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00955 and PS417_00960 are separated by 37 nucleotides PS417_00960 and PS417_00965 are separated by 127 nucleotides PS417_00965 and PS417_00970 are separated by 82 nucleotides PS417_00970 and PS417_00975 are separated by 15 nucleotides
PS417_00955: PS417_00955 - Crp/Fnr family transcriptional regulator, at 212,940 to 213,626
_00955
PS417_00960: PS417_00960 - transcriptional regulator, at 213,664 to 214,029
_00960
PS417_00965: PS417_00965 - AraC family transcriptional regulator, at 214,157 to 215,161
_00965
PS417_00970: PS417_00970 - hypothetical protein, at 215,244 to 216,023
_00970
PS417_00975: PS417_00975 - hypothetical protein, at 216,039 to 216,356
_00975
Position (kb) 214
215
216 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 213.289 kb on + strand, within PS417_00955 at 213.289 kb on + strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.290 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.464 kb on - strand, within PS417_00955 at 213.664 kb on - strand at 213.952 kb on + strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960 at 213.953 kb on - strand, within PS417_00960 at 214.687 kb on - strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.722 kb on + strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 214.723 kb on - strand, within PS417_00965 at 215.239 kb on - strand at 215.448 kb on + strand, within PS417_00970 at 215.449 kb on - strand, within PS417_00970 at 215.547 kb on + strand, within PS417_00970 at 215.548 kb on - strand, within PS417_00970 at 215.574 kb on - strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.832 kb on + strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.833 kb on - strand, within PS417_00970 at 215.868 kb on + strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 215.869 kb on - strand, within PS417_00970 at 216.045 kb on + strand at 216.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 213,289 + PS417_00955 0.51 -0.1 213,289 + PS417_00955 0.51 -1.3 213,290 - PS417_00955 0.51 +0.3 213,290 - PS417_00955 0.51 +0.3 213,464 - PS417_00955 0.76 -0.8 213,464 - PS417_00955 0.76 +1.1 213,664 - -0.5 213,952 + PS417_00960 0.79 -0.3 213,953 - PS417_00960 0.79 -0.3 213,953 - PS417_00960 0.79 +0.4 214,687 - PS417_00965 0.53 -0.9 214,722 + PS417_00965 0.56 -1.4 214,722 + PS417_00965 0.56 +0.7 214,722 + PS417_00965 0.56 -1.6 214,723 - PS417_00965 0.56 -0.8 214,723 - PS417_00965 0.56 -1.0 214,723 - PS417_00965 0.56 -0.1 215,239 - +0.2 215,448 + PS417_00970 0.26 -0.9 215,449 - PS417_00970 0.26 +0.3 215,547 + PS417_00970 0.39 -0.6 215,548 - PS417_00970 0.39 +0.6 215,574 - PS417_00970 0.42 +0.3 215,832 + PS417_00970 0.75 -3.1 215,832 + PS417_00970 0.75 +0.3 215,833 - PS417_00970 0.76 +1.9 215,833 - PS417_00970 0.76 -0.4 215,868 + PS417_00970 0.80 +0.5 215,869 - PS417_00970 0.80 -0.6 215,869 - PS417_00970 0.80 -0.1 216,045 + -0.9 216,046 - +0.9
Or see this region's nucleotide sequence