Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00785 and PS417_00790 are separated by 40 nucleotides PS417_00790 and PS417_00795 are separated by 41 nucleotides PS417_00795 and PS417_00800 overlap by 4 nucleotides PS417_00800 and PS417_00805 are separated by 112 nucleotides
PS417_00785: PS417_00785 - hypothetical protein, at 175,540 to 176,121
_00785
PS417_00790: PS417_00790 - curli production assembly protein CsgG, at 176,162 to 176,842
_00790
PS417_00795: PS417_00795 - lipoprotein, at 176,884 to 177,246
_00795
PS417_00800: PS417_00800 - lipoprotein, at 177,243 to 177,893
_00800
PS417_00805: PS417_00805 - hypothetical protein, at 178,006 to 179,646
_00805
Position (kb) 176
177
178 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 175.906 kb on + strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 175.907 kb on - strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.062 kb on + strand, within PS417_00785 at 176.063 kb on - strand at 176.063 kb on - strand at 176.150 kb on + strand at 176.151 kb on - strand at 176.151 kb on - strand at 176.289 kb on - strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.342 kb on + strand, within PS417_00790 at 176.343 kb on - strand, within PS417_00790 at 176.615 kb on + strand, within PS417_00790 at 176.666 kb on + strand at 176.667 kb on - strand, within PS417_00790 at 176.667 kb on - strand, within PS417_00790 at 176.667 kb on - strand, within PS417_00790 at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.877 kb on + strand at 176.878 kb on - strand at 176.878 kb on - strand at 176.966 kb on - strand, within PS417_00795 at 176.966 kb on - strand, within PS417_00795 at 177.001 kb on + strand, within PS417_00795 at 177.002 kb on - strand, within PS417_00795 at 177.119 kb on - strand, within PS417_00795 at 177.119 kb on - strand, within PS417_00795 at 177.197 kb on - strand, within PS417_00795 at 177.240 kb on + strand at 177.241 kb on - strand at 177.322 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand, within PS417_00800 at 177.331 kb on - strand at 177.403 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.448 kb on - strand, within PS417_00800 at 177.451 kb on - strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.573 kb on + strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.574 kb on - strand, within PS417_00800 at 177.603 kb on + strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 177.604 kb on - strand, within PS417_00800 at 178.157 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 175,906 + PS417_00785 0.63 -1.8 175,907 - PS417_00785 0.63 +1.1 175,907 - PS417_00785 0.63 +0.4 176,062 + PS417_00785 0.90 -1.5 176,062 + PS417_00785 0.90 -1.1 176,062 + PS417_00785 0.90 -1.0 176,063 - +1.1 176,063 - +1.0 176,150 + +0.1 176,151 - -0.3 176,151 - -1.9 176,289 - PS417_00790 0.19 -3.3 176,342 + PS417_00790 0.26 +0.3 176,342 + PS417_00790 0.26 +0.5 176,342 + PS417_00790 0.26 +0.0 176,342 + PS417_00790 0.26 -1.1 176,343 - PS417_00790 0.27 +0.9 176,615 + PS417_00790 0.67 +0.0 176,666 + +1.7 176,667 - PS417_00790 0.74 -0.7 176,667 - PS417_00790 0.74 -0.9 176,667 - PS417_00790 0.74 -0.6 176,877 + -0.1 176,877 + -0.3 176,877 + +0.7 176,877 + -2.1 176,877 + +2.7 176,878 - +0.2 176,878 - -0.9 176,966 - PS417_00795 0.23 -0.2 176,966 - PS417_00795 0.23 -0.7 177,001 + PS417_00795 0.32 -0.6 177,002 - PS417_00795 0.33 -1.0 177,119 - PS417_00795 0.65 -0.1 177,119 - PS417_00795 0.65 -2.1 177,197 - PS417_00795 0.86 -2.1 177,240 + -1.6 177,241 - -1.0 177,322 - PS417_00800 0.12 -1.8 177,331 - PS417_00800 0.14 -0.8 177,331 - PS417_00800 0.14 -0.6 177,331 - +2.0 177,403 - PS417_00800 0.25 +1.2 177,448 - PS417_00800 0.31 -0.6 177,448 - PS417_00800 0.31 -1.2 177,451 - PS417_00800 0.32 -0.3 177,573 + PS417_00800 0.51 -1.9 177,573 + PS417_00800 0.51 -0.8 177,574 - PS417_00800 0.51 -0.2 177,574 - PS417_00800 0.51 +0.2 177,603 + PS417_00800 0.55 +0.5 177,604 - PS417_00800 0.55 +0.1 177,604 - PS417_00800 0.55 +0.5 177,604 - PS417_00800 0.55 -0.5 177,604 - PS417_00800 0.55 +1.1 177,604 - PS417_00800 0.55 +0.8 178,157 + -0.6
Or see this region's nucleotide sequence