Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00740 and PS417_00745 are separated by 12 nucleotides PS417_00745 and PS417_00750 are separated by 2 nucleotides
PS417_00740: PS417_00740 - membrane protein, at 154,789 to 157,269
_00740
PS417_00745: PS417_00745 - outer membrane N-deacetylase, at 157,282 to 159,279
_00745
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.397 kb on + strand, within PS417_00740 at 156.908 kb on - strand, within PS417_00740 at 156.975 kb on + strand, within PS417_00740 at 157.043 kb on - strand at 157.096 kb on + strand at 157.096 kb on + strand at 157.096 kb on + strand at 157.097 kb on - strand at 157.097 kb on - strand at 157.112 kb on - strand at 157.259 kb on - strand at 157.267 kb on + strand at 157.267 kb on + strand at 157.529 kb on - strand, within PS417_00745 at 157.621 kb on + strand, within PS417_00745 at 157.622 kb on - strand, within PS417_00745 at 157.633 kb on + strand, within PS417_00745 at 157.918 kb on + strand, within PS417_00745 at 158.026 kb on + strand at 158.075 kb on - strand, within PS417_00745 at 158.245 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.377 kb on + strand, within PS417_00745 at 158.378 kb on - strand, within PS417_00745 at 158.464 kb on + strand, within PS417_00745 at 158.464 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.566 kb on + strand, within PS417_00745 at 158.621 kb on - strand, within PS417_00745 at 158.663 kb on - strand, within PS417_00745 at 158.962 kb on + strand, within PS417_00745 at 158.963 kb on - strand, within PS417_00745 at 159.011 kb on - strand, within PS417_00745 at 159.087 kb on - strand at 159.432 kb on + strand, within PS417_00750 at 159.433 kb on - strand, within PS417_00750 at 159.433 kb on - strand, within PS417_00750 at 159.531 kb on + strand, within PS417_00750 at 159.532 kb on - strand, within PS417_00750 at 159.753 kb on + strand, within PS417_00750 at 159.754 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.805 kb on - strand, within PS417_00750 at 159.996 kb on - strand, within PS417_00750 at 160.095 kb on + strand, within PS417_00750 at 160.096 kb on - strand, within PS417_00750
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 156,397 + PS417_00740 0.65 -1.1 156,908 - PS417_00740 0.85 -0.7 156,975 + PS417_00740 0.88 -0.7 157,043 - -0.2 157,096 + -3.7 157,096 + -0.0 157,096 + +0.7 157,097 - -0.0 157,097 - +0.8 157,112 - -0.0 157,259 - -0.3 157,267 + -0.6 157,267 + +1.2 157,529 - PS417_00745 0.12 +0.4 157,621 + PS417_00745 0.17 +0.1 157,622 - PS417_00745 0.17 -1.1 157,633 + PS417_00745 0.18 +2.7 157,918 + PS417_00745 0.32 +0.2 158,026 + +1.7 158,075 - PS417_00745 0.40 +0.4 158,245 + PS417_00745 0.48 +0.3 158,377 + PS417_00745 0.55 +1.4 158,377 + PS417_00745 0.55 -0.1 158,377 + PS417_00745 0.55 +0.4 158,377 + PS417_00745 0.55 -0.3 158,378 - PS417_00745 0.55 -0.2 158,464 + PS417_00745 0.59 +1.1 158,464 + PS417_00745 0.59 +1.2 158,566 + PS417_00745 0.64 +1.8 158,566 + PS417_00745 0.64 +0.6 158,566 + PS417_00745 0.64 +0.9 158,566 + PS417_00745 0.64 +0.6 158,621 - PS417_00745 0.67 -0.1 158,663 - PS417_00745 0.69 -0.3 158,962 + PS417_00745 0.84 +1.6 158,963 - PS417_00745 0.84 -0.6 159,011 - PS417_00745 0.87 +0.8 159,087 - +0.0 159,432 + PS417_00750 0.11 -2.7 159,433 - PS417_00750 0.11 +0.6 159,433 - PS417_00750 0.11 -2.4 159,531 + PS417_00750 0.19 -0.9 159,532 - PS417_00750 0.19 +1.0 159,753 + PS417_00750 0.35 +0.0 159,754 - PS417_00750 0.35 -0.1 159,805 - PS417_00750 0.39 +1.7 159,805 - PS417_00750 0.39 -2.2 159,805 - PS417_00750 0.39 -2.7 159,805 - PS417_00750 0.39 -0.3 159,996 - PS417_00750 0.53 -0.4 160,095 + PS417_00750 0.61 +1.1 160,096 - PS417_00750 0.61 +0.6
Or see this region's nucleotide sequence