Strain Fitness in Pseudomonas simiae WCS417 around PS417_06400

Experiment: P. simiae ORA MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. simiae ORA MOI 1
1,417,888	+				+1.3
1,417,888	+				-0.2
1,417,889	-				+0.2
1,417,889	-				-1.9
1,417,954	-				-0.2
1,418,459	-		PS417_06395	0.48	-1.3
1,418,543	+		PS417_06395	0.59	-0.2
1,418,543	+		PS417_06395	0.59	-2.2
1,418,544	-		PS417_06395	0.60	+2.9
1,418,848	+				+0.6
1,418,848	+				-0.5
1,418,848	+				+0.2
1,418,848	+				-0.5
1,418,878	+				+0.2
1,418,879	-				+1.4
1,419,054	-		PS417_06400	0.17	-2.7
1,419,076	+		PS417_06400	0.19	-1.1
1,419,194	+		PS417_06400	0.29	+0.2
1,419,404	+		PS417_06400	0.48	-0.3
1,419,404	+		PS417_06400	0.48	-0.8
1,419,405	-		PS417_06400	0.48	-0.7
1,419,707	+		PS417_06400	0.75	-2.2
1,419,884	+				-0.7
1,420,130	+		PS417_06405	0.17	-0.5
1,420,130	+		PS417_06405	0.17	-0.2
1,420,230	-		PS417_06405	0.31	-0.5
1,420,234	+		PS417_06405	0.31	+0.3
1,420,234	+		PS417_06405	0.31	-0.4
1,420,235	-		PS417_06405	0.32	-0.1
1,420,235	-		PS417_06405	0.32	+0.8
1,420,237	+		PS417_06405	0.32	+0.2
1,420,276	+		PS417_06405	0.37	-0.3
1,420,277	-		PS417_06405	0.37	+0.4
1,420,277	-		PS417_06405	0.37	+0.4
1,420,474	+		PS417_06405	0.65	-0.2
1,420,474	+		PS417_06405	0.65	-0.4
1,420,474	+		PS417_06405	0.65	+0.6
1,420,487	-		PS417_06405	0.67	-0.6
1,420,487	-		PS417_06405	0.67	-0.2
1,420,507	+		PS417_06405	0.70	-2.1
1,420,507	+		PS417_06405	0.70	+0.7
1,420,531	+		PS417_06405	0.73	-0.2
1,420,531	+		PS417_06405	0.73	+0.3
1,420,532	-		PS417_06405	0.73	-0.7
1,420,537	+		PS417_06405	0.74	-1.0
1,420,537	+		PS417_06405	0.74	+2.5
1,420,557	+		PS417_06405	0.77	-0.1
1,420,680	-				+2.5
1,420,681	+				-0.1
1,420,682	-				+0.4
1,420,682	-				-0.4
1,420,700	-				+0.9
1,420,750	-				+1.1
1,420,804	-				-1.3
1,420,842	+		PS417_06410	0.17	-2.1
1,420,842	+		PS417_06410	0.17	-0.8