Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00625 and PS417_00630 are separated by 14 nucleotides PS417_00630 and PS417_00635 are separated by 1 nucleotides PS417_00635 and PS417_00640 are separated by 11 nucleotides
PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140
_00625
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033
_00635
PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893
_00640
Position (kb) 129
130
131 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 128.204 kb on + strand at 128.207 kb on - strand at 128.261 kb on + strand at 128.262 kb on - strand at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.615 kb on + strand, within PS417_00625 at 128.616 kb on - strand, within PS417_00625 at 128.766 kb on + strand, within PS417_00625 at 128.977 kb on - strand, within PS417_00625 at 129.006 kb on + strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.091 kb on + strand at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 130.142 kb on + strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.398 kb on - strand, within PS417_00635 at 130.545 kb on - strand, within PS417_00635 at 130.587 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 131.028 kb on + strand at 131.029 kb on - strand at 131.058 kb on - strand at 131.058 kb on - strand at 131.070 kb on + strand at 131.071 kb on - strand at 131.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 128,204 + -0.3 128,207 - -1.8 128,261 + +1.3 128,262 - -2.6 128,613 + PS417_00625 0.41 +1.3 128,613 + PS417_00625 0.41 -1.9 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.0 128,613 + PS417_00625 0.41 +0.8 128,614 - PS417_00625 0.41 -2.8 128,614 - PS417_00625 0.41 -1.8 128,614 - PS417_00625 0.41 -3.4 128,614 - PS417_00625 0.41 -2.4 128,614 - PS417_00625 0.41 -4.9 128,615 + PS417_00625 0.41 +2.0 128,616 - PS417_00625 0.41 -2.7 128,766 + PS417_00625 0.58 -1.8 128,977 - PS417_00625 0.82 -3.2 129,006 + PS417_00625 0.85 -0.0 129,007 - PS417_00625 0.85 -3.3 129,007 - PS417_00625 0.85 -3.9 129,007 - PS417_00625 0.85 -1.9 129,091 + -0.3 129,293 + PS417_00630 0.13 +2.5 129,294 - PS417_00630 0.14 -3.6 129,642 - PS417_00630 0.47 -2.0 129,693 - PS417_00630 0.52 -3.0 129,693 - PS417_00630 0.52 -3.7 129,693 - PS417_00630 0.52 -2.7 129,831 - PS417_00630 0.66 -1.3 129,831 - PS417_00630 0.66 -3.2 129,906 - PS417_00630 0.73 -4.8 129,980 + PS417_00630 0.80 -0.1 129,980 + PS417_00630 0.80 +0.2 129,980 + PS417_00630 0.80 +0.6 129,980 + PS417_00630 0.80 +0.0 129,981 - PS417_00630 0.81 -2.0 129,981 - PS417_00630 0.81 -3.1 129,981 - PS417_00630 0.81 -0.6 130,142 + -0.4 130,143 - -0.0 130,143 - -2.2 130,143 - +0.7 130,143 - -2.5 130,143 - -2.3 130,398 - PS417_00635 0.25 -0.7 130,545 - PS417_00635 0.43 -1.8 130,587 + PS417_00635 0.48 -0.2 130,905 + PS417_00635 0.85 +0.5 130,905 + PS417_00635 0.85 +0.3 131,028 + +0.9 131,029 - -1.1 131,058 - -0.4 131,058 - -0.3 131,070 + -0.2 131,071 - -0.9 131,071 - +0.0
Or see this region's nucleotide sequence