Experiment: P. simiae ORA MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00620 and PS417_00625 are separated by 366 nucleotides PS417_00625 and PS417_00630 are separated by 14 nucleotides
PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880
_00620
PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140
_00625
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
Position (kb) 128
129
130 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 127.432 kb on + strand, within PS417_00620 at 127.433 kb on - strand, within PS417_00620 at 127.478 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.594 kb on + strand, within PS417_00620 at 127.595 kb on - strand, within PS417_00620 at 127.833 kb on - strand at 127.833 kb on - strand at 127.898 kb on + strand at 127.899 kb on - strand at 127.899 kb on - strand at 127.901 kb on + strand at 127.902 kb on - strand at 127.902 kb on - strand at 127.937 kb on - strand at 127.981 kb on + strand at 127.981 kb on + strand at 127.995 kb on + strand at 127.996 kb on - strand at 128.024 kb on + strand at 128.024 kb on + strand at 128.034 kb on + strand at 128.106 kb on + strand at 128.120 kb on - strand at 128.204 kb on + strand at 128.207 kb on - strand at 128.261 kb on + strand at 128.262 kb on - strand at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.615 kb on + strand, within PS417_00625 at 128.616 kb on - strand, within PS417_00625 at 128.766 kb on + strand, within PS417_00625 at 128.977 kb on - strand, within PS417_00625 at 129.006 kb on + strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.091 kb on + strand at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 1 remove 127,432 + PS417_00620 0.37 +0.5 127,433 - PS417_00620 0.37 -3.1 127,478 - PS417_00620 0.43 +0.0 127,506 - PS417_00620 0.47 +1.1 127,506 - PS417_00620 0.47 -0.1 127,506 - PS417_00620 0.47 +0.6 127,594 + PS417_00620 0.60 +0.1 127,595 - PS417_00620 0.60 -1.2 127,833 - +0.4 127,833 - -0.9 127,898 + -0.4 127,899 - -0.9 127,899 - -2.1 127,901 + +0.9 127,902 - -1.1 127,902 - -1.2 127,937 - -1.1 127,981 + +0.1 127,981 + +0.5 127,995 + -0.1 127,996 - -4.3 128,024 + -3.0 128,024 + -0.3 128,034 + -2.1 128,106 + -0.2 128,120 - -5.0 128,204 + -0.3 128,207 - -1.8 128,261 + +1.3 128,262 - -2.6 128,613 + PS417_00625 0.41 +1.3 128,613 + PS417_00625 0.41 -1.9 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.0 128,613 + PS417_00625 0.41 +0.8 128,614 - PS417_00625 0.41 -2.8 128,614 - PS417_00625 0.41 -1.8 128,614 - PS417_00625 0.41 -3.4 128,614 - PS417_00625 0.41 -2.4 128,614 - PS417_00625 0.41 -4.9 128,615 + PS417_00625 0.41 +2.0 128,616 - PS417_00625 0.41 -2.7 128,766 + PS417_00625 0.58 -1.8 128,977 - PS417_00625 0.82 -3.2 129,006 + PS417_00625 0.85 -0.0 129,007 - PS417_00625 0.85 -3.3 129,007 - PS417_00625 0.85 -3.9 129,007 - PS417_00625 0.85 -1.9 129,091 + -0.3 129,293 + PS417_00630 0.13 +2.5 129,294 - PS417_00630 0.14 -3.6 129,642 - PS417_00630 0.47 -2.0 129,693 - PS417_00630 0.52 -3.0 129,693 - PS417_00630 0.52 -3.7 129,693 - PS417_00630 0.52 -2.7 129,831 - PS417_00630 0.66 -1.3 129,831 - PS417_00630 0.66 -3.2 129,906 - PS417_00630 0.73 -4.8 129,980 + PS417_00630 0.80 -0.1 129,980 + PS417_00630 0.80 +0.2 129,980 + PS417_00630 0.80 +0.6 129,980 + PS417_00630 0.80 +0.0 129,981 - PS417_00630 0.81 -2.0 129,981 - PS417_00630 0.81 -3.1 129,981 - PS417_00630 0.81 -0.6
Or see this region's nucleotide sequence