Experiment: P. simiae ORA MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19385 and PS417_19390 are separated by 81 nucleotides PS417_19390 and PS417_19395 are separated by 175 nucleotides
PS417_19385: PS417_19385 - GntR family transcriptional regulator, at 4,200,680 to 4,201,846
_19385
PS417_19390: PS417_19390 - MarR family transcriptional regulator, at 4,201,928 to 4,202,359
_19390
PS417_19395: PS417_19395 - guanine permease, at 4,202,535 to 4,203,881
_19395
Position (kb) 4201
4202
4203 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4201.026 kb on + strand, within PS417_19385 at 4201.026 kb on + strand, within PS417_19385 at 4201.191 kb on + strand, within PS417_19385 at 4201.378 kb on - strand, within PS417_19385 at 4201.452 kb on - strand, within PS417_19385 at 4201.452 kb on - strand, within PS417_19385 at 4201.503 kb on + strand, within PS417_19385 at 4201.504 kb on - strand, within PS417_19385 at 4201.545 kb on + strand, within PS417_19385 at 4201.546 kb on - strand, within PS417_19385 at 4201.919 kb on + strand at 4201.928 kb on - strand at 4202.506 kb on - strand at 4202.512 kb on - strand at 4202.512 kb on - strand at 4202.682 kb on + strand, within PS417_19395 at 4202.682 kb on + strand, within PS417_19395 at 4202.682 kb on + strand, within PS417_19395 at 4202.682 kb on + strand, within PS417_19395 at 4202.683 kb on - strand, within PS417_19395 at 4202.850 kb on + strand, within PS417_19395 at 4202.851 kb on - strand, within PS417_19395 at 4202.875 kb on - strand at 4202.906 kb on + strand, within PS417_19395 at 4202.907 kb on - strand, within PS417_19395 at 4203.151 kb on - strand, within PS417_19395 at 4203.151 kb on - strand, within PS417_19395 at 4203.228 kb on + strand, within PS417_19395 at 4203.228 kb on + strand, within PS417_19395 at 4203.228 kb on + strand, within PS417_19395 at 4203.228 kb on + strand, within PS417_19395 at 4203.228 kb on + strand, within PS417_19395 at 4203.229 kb on - strand, within PS417_19395 at 4203.229 kb on - strand, within PS417_19395 at 4203.229 kb on - strand, within PS417_19395
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 10 remove 4,201,026 + PS417_19385 0.30 +0.2 4,201,026 + PS417_19385 0.30 -1.9 4,201,191 + PS417_19385 0.44 -0.3 4,201,378 - PS417_19385 0.60 +0.0 4,201,452 - PS417_19385 0.66 -0.2 4,201,452 - PS417_19385 0.66 +0.0 4,201,503 + PS417_19385 0.71 -0.4 4,201,504 - PS417_19385 0.71 -2.6 4,201,545 + PS417_19385 0.74 -0.6 4,201,546 - PS417_19385 0.74 -2.9 4,201,919 + +0.1 4,201,928 - -0.1 4,202,506 - -0.4 4,202,512 - +0.6 4,202,512 - +2.8 4,202,682 + PS417_19395 0.11 +0.1 4,202,682 + PS417_19395 0.11 -1.2 4,202,682 + PS417_19395 0.11 +0.1 4,202,682 + PS417_19395 0.11 +0.2 4,202,683 - PS417_19395 0.11 -1.6 4,202,850 + PS417_19395 0.23 -0.2 4,202,851 - PS417_19395 0.23 -0.1 4,202,875 - +2.3 4,202,906 + PS417_19395 0.28 -1.4 4,202,907 - PS417_19395 0.28 +1.7 4,203,151 - PS417_19395 0.46 +0.0 4,203,151 - PS417_19395 0.46 +0.1 4,203,228 + PS417_19395 0.51 -1.5 4,203,228 + PS417_19395 0.51 -2.1 4,203,228 + PS417_19395 0.51 -1.8 4,203,228 + PS417_19395 0.51 +0.9 4,203,228 + PS417_19395 0.51 +0.6 4,203,229 - PS417_19395 0.52 +1.4 4,203,229 - PS417_19395 0.52 -1.5 4,203,229 - PS417_19395 0.52 +0.6
Or see this region's nucleotide sequence