Experiment: P. simiae ORA MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19060 and PS417_19065 overlap by 4 nucleotides PS417_19065 and PS417_19070 overlap by 12 nucleotides PS417_19070 and PS417_19075 are separated by 4 nucleotides
PS417_19060: PS417_19060 - NADPH:quinone oxidoreductase, at 4,124,278 to 4,125,258
_19060
PS417_19065: PS417_19065 - monooxygenase, at 4,125,255 to 4,125,593
_19065
PS417_19070: PS417_19070 - hypothetical protein, at 4,125,582 to 4,126,310
_19070
PS417_19075: PS417_19075 - ABC transporter ATP-binding protein, at 4,126,315 to 4,127,646
_19075
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4124.723 kb on + strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.724 kb on - strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.872 kb on + strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4124.873 kb on - strand, within PS417_19060 at 4125.098 kb on + strand, within PS417_19060 at 4125.099 kb on - strand, within PS417_19060 at 4125.148 kb on + strand, within PS417_19060 at 4125.522 kb on + strand, within PS417_19065 at 4125.660 kb on + strand, within PS417_19070 at 4125.674 kb on - strand, within PS417_19070 at 4125.688 kb on - strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.945 kb on + strand, within PS417_19070 at 4125.946 kb on - strand, within PS417_19070 at 4125.947 kb on + strand at 4125.947 kb on + strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4125.948 kb on - strand, within PS417_19070 at 4126.056 kb on + strand, within PS417_19070 at 4126.057 kb on - strand, within PS417_19070 at 4126.076 kb on - strand, within PS417_19070 at 4126.085 kb on + strand, within PS417_19070 at 4126.086 kb on - strand, within PS417_19070 at 4126.258 kb on + strand at 4126.259 kb on - strand at 4126.377 kb on + strand at 4126.378 kb on - strand at 4126.499 kb on - strand at 4126.509 kb on - strand, within PS417_19075 at 4126.509 kb on - strand, within PS417_19075 at 4126.627 kb on + strand, within PS417_19075 at 4126.628 kb on - strand, within PS417_19075 at 4126.628 kb on - strand, within PS417_19075 at 4126.665 kb on + strand, within PS417_19075 at 4126.666 kb on - strand, within PS417_19075 at 4126.666 kb on - strand, within PS417_19075 at 4126.666 kb on - strand, within PS417_19075 at 4126.666 kb on - strand, within PS417_19075 at 4126.666 kb on - strand, within PS417_19075 at 4126.667 kb on + strand, within PS417_19075 at 4126.667 kb on + strand, within PS417_19075 at 4126.668 kb on - strand, within PS417_19075 at 4126.673 kb on + strand, within PS417_19075 at 4126.673 kb on + strand, within PS417_19075 at 4126.674 kb on - strand, within PS417_19075 at 4126.674 kb on - strand, within PS417_19075 at 4126.674 kb on - strand at 4126.761 kb on - strand, within PS417_19075 at 4126.799 kb on + strand, within PS417_19075 at 4126.938 kb on - strand, within PS417_19075 at 4127.017 kb on + strand, within PS417_19075 at 4127.073 kb on + strand, within PS417_19075 at 4127.074 kb on - strand, within PS417_19075 at 4127.080 kb on + strand, within PS417_19075 at 4127.097 kb on + strand, within PS417_19075 at 4127.097 kb on + strand, within PS417_19075 at 4127.098 kb on - strand, within PS417_19075 at 4127.207 kb on + strand at 4127.207 kb on + strand, within PS417_19075 at 4127.207 kb on + strand, within PS417_19075
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 10 remove 4,124,723 + PS417_19060 0.45 +1.3 4,124,724 - PS417_19060 0.45 +1.4 4,124,724 - PS417_19060 0.45 -1.1 4,124,724 - PS417_19060 0.45 +0.1 4,124,872 + PS417_19060 0.61 +0.3 4,124,872 + PS417_19060 0.61 +0.6 4,124,872 + PS417_19060 0.61 +0.5 4,124,873 - PS417_19060 0.61 -2.6 4,124,873 - PS417_19060 0.61 +0.5 4,125,098 + PS417_19060 0.84 +0.7 4,125,099 - PS417_19060 0.84 +0.6 4,125,148 + PS417_19060 0.89 -0.0 4,125,522 + PS417_19065 0.79 +1.8 4,125,660 + PS417_19070 0.11 -0.2 4,125,674 - PS417_19070 0.13 +0.9 4,125,688 - PS417_19070 0.15 -0.2 4,125,945 + PS417_19070 0.50 -1.1 4,125,945 + PS417_19070 0.50 -0.6 4,125,946 - PS417_19070 0.50 +0.3 4,125,947 + +1.7 4,125,947 + PS417_19070 0.50 +0.9 4,125,948 - PS417_19070 0.50 +0.7 4,125,948 - PS417_19070 0.50 +3.5 4,126,056 + PS417_19070 0.65 +0.7 4,126,057 - PS417_19070 0.65 +1.0 4,126,076 - PS417_19070 0.68 -0.2 4,126,085 + PS417_19070 0.69 +1.0 4,126,086 - PS417_19070 0.69 -0.6 4,126,258 + -0.8 4,126,259 - +1.0 4,126,377 + -0.0 4,126,378 - -1.3 4,126,499 - +0.2 4,126,509 - PS417_19075 0.15 -2.2 4,126,509 - PS417_19075 0.15 -1.7 4,126,627 + PS417_19075 0.23 -0.8 4,126,628 - PS417_19075 0.23 -1.8 4,126,628 - PS417_19075 0.23 -1.0 4,126,665 + PS417_19075 0.26 -1.3 4,126,666 - PS417_19075 0.26 -0.3 4,126,666 - PS417_19075 0.26 -0.2 4,126,666 - PS417_19075 0.26 -0.9 4,126,666 - PS417_19075 0.26 -0.6 4,126,666 - PS417_19075 0.26 -0.8 4,126,667 + PS417_19075 0.26 +0.5 4,126,667 + PS417_19075 0.26 -3.2 4,126,668 - PS417_19075 0.27 -0.3 4,126,673 + PS417_19075 0.27 +0.7 4,126,673 + PS417_19075 0.27 +0.2 4,126,674 - PS417_19075 0.27 -0.0 4,126,674 - PS417_19075 0.27 +0.2 4,126,674 - +1.2 4,126,761 - PS417_19075 0.33 -1.2 4,126,799 + PS417_19075 0.36 -0.7 4,126,938 - PS417_19075 0.47 -0.1 4,127,017 + PS417_19075 0.53 -0.8 4,127,073 + PS417_19075 0.57 +0.3 4,127,074 - PS417_19075 0.57 -3.3 4,127,080 + PS417_19075 0.57 -0.3 4,127,097 + PS417_19075 0.59 +0.1 4,127,097 + PS417_19075 0.59 +0.3 4,127,098 - PS417_19075 0.59 -0.7 4,127,207 + +2.5 4,127,207 + PS417_19075 0.67 -0.6 4,127,207 + PS417_19075 0.67 +0.1
Or see this region's nucleotide sequence