Experiment: P. simiae ORA MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01505 and PS417_01510 are separated by 108 nucleotides PS417_01510 and PS417_01515 are separated by 12 nucleotides
PS417_01505: PS417_01505 - gamma-aminobutyrate transporter, at 333,707 to 335,098
_01505
PS417_01510: PS417_01510 - hypothetical protein, at 335,207 to 335,620
_01510
PS417_01515: PS417_01515 - alpha/beta hydrolase, at 335,633 to 336,577
_01515
Position (kb) 335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.409 kb on - strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.451 kb on + strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.452 kb on - strand, within PS417_01505 at 334.516 kb on - strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.622 kb on + strand, within PS417_01505 at 334.623 kb on - strand, within PS417_01505 at 334.709 kb on + strand, within PS417_01505 at 334.710 kb on - strand, within PS417_01505 at 334.763 kb on + strand at 334.763 kb on + strand at 334.764 kb on - strand, within PS417_01505 at 334.829 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.928 kb on + strand, within PS417_01505 at 334.991 kb on - strand at 335.088 kb on + strand at 335.097 kb on - strand at 335.100 kb on + strand at 335.305 kb on + strand, within PS417_01510 at 335.306 kb on - strand, within PS417_01510 at 335.347 kb on + strand, within PS417_01510 at 335.689 kb on + strand at 335.689 kb on + strand at 335.752 kb on - strand, within PS417_01515 at 335.795 kb on + strand at 335.796 kb on - strand, within PS417_01515 at 335.796 kb on - strand, within PS417_01515 at 335.844 kb on + strand, within PS417_01515 at 335.845 kb on - strand, within PS417_01515 at 335.852 kb on + strand, within PS417_01515 at 335.870 kb on + strand, within PS417_01515 at 335.941 kb on + strand, within PS417_01515 at 336.223 kb on + strand, within PS417_01515 at 336.224 kb on - strand, within PS417_01515 at 336.373 kb on - strand, within PS417_01515
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae ORA MOI 10 remove 334,409 - PS417_01505 0.50 +0.8 334,451 + PS417_01505 0.53 +1.2 334,451 + PS417_01505 0.53 +1.4 334,452 - PS417_01505 0.54 +0.1 334,452 - PS417_01505 0.54 -1.9 334,516 - PS417_01505 0.58 -1.3 334,622 + PS417_01505 0.66 +1.7 334,622 + PS417_01505 0.66 -0.4 334,623 - PS417_01505 0.66 +0.4 334,709 + PS417_01505 0.72 +1.4 334,710 - PS417_01505 0.72 +1.0 334,763 + -0.6 334,763 + -0.2 334,764 - PS417_01505 0.76 -0.9 334,829 + PS417_01505 0.81 -1.5 334,928 + PS417_01505 0.88 +1.4 334,928 + PS417_01505 0.88 +0.4 334,928 + PS417_01505 0.88 -0.1 334,991 - -0.3 335,088 + +1.2 335,097 - -1.4 335,100 + -0.1 335,305 + PS417_01510 0.24 -0.7 335,306 - PS417_01510 0.24 -1.0 335,347 + PS417_01510 0.34 -1.9 335,689 + -1.6 335,689 + -1.7 335,752 - PS417_01515 0.13 +3.0 335,795 + -0.9 335,796 - PS417_01515 0.17 -0.7 335,796 - PS417_01515 0.17 -0.7 335,844 + PS417_01515 0.22 +0.4 335,845 - PS417_01515 0.22 -0.6 335,852 + PS417_01515 0.23 +0.2 335,870 + PS417_01515 0.25 -1.0 335,941 + PS417_01515 0.33 -0.8 336,223 + PS417_01515 0.62 +0.3 336,224 - PS417_01515 0.63 -0.2 336,373 - PS417_01515 0.78 +2.1
Or see this region's nucleotide sequence