Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4203 and PP_4204 are separated by 71 nucleotides PP_4204 and PP_4205 are separated by 2 nucleotides PP_4205 and PP_4206 are separated by 94 nucleotides
PP_4203: PP_4203 - Electron transfer flavoprotein-ubiquinone oxidoreductase, at 4,748,297 to 4,749,979
_4203
PP_4204: PP_4204 - antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor, at 4,750,051 to 4,750,452
_4204
PP_4205: PP_4205 - mRNA interferase MqsR of the MqsA-MqsR antitoxin/toxin complex and DNA-binding transcriptional repressor, at 4,750,455 to 4,750,751
_4205
PP_4206: PP_4206 - Major facilitator family transporter, at 4,750,846 to 4,752,171
_4206
Position (kb) 4750
4751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4749.977 kb on + strand at 4749.977 kb on + strand at 4749.978 kb on - strand at 4749.978 kb on - strand at 4749.978 kb on - strand at 4749.978 kb on - strand at 4750.060 kb on - strand at 4750.222 kb on + strand, within PP_4204 at 4750.222 kb on + strand, within PP_4204 at 4750.222 kb on + strand, within PP_4204 at 4750.233 kb on + strand, within PP_4204 at 4750.234 kb on - strand, within PP_4204 at 4750.234 kb on - strand, within PP_4204 at 4750.358 kb on - strand, within PP_4204 at 4750.389 kb on - strand, within PP_4204 at 4750.389 kb on - strand, within PP_4204 at 4750.389 kb on - strand, within PP_4204 at 4750.393 kb on - strand, within PP_4204 at 4750.393 kb on - strand, within PP_4204 at 4750.393 kb on - strand, within PP_4204 at 4750.395 kb on - strand, within PP_4204 at 4750.395 kb on - strand, within PP_4204 at 4750.395 kb on - strand, within PP_4204 at 4750.395 kb on - strand, within PP_4204 at 4750.438 kb on + strand at 4750.456 kb on + strand at 4750.457 kb on - strand at 4750.491 kb on + strand, within PP_4205 at 4750.510 kb on + strand, within PP_4205 at 4750.511 kb on - strand, within PP_4205 at 4750.511 kb on - strand, within PP_4205 at 4750.529 kb on + strand, within PP_4205 at 4750.529 kb on + strand, within PP_4205 at 4750.530 kb on - strand, within PP_4205 at 4750.541 kb on - strand, within PP_4205 at 4750.568 kb on + strand at 4750.588 kb on + strand, within PP_4205 at 4750.588 kb on + strand, within PP_4205 at 4750.589 kb on - strand, within PP_4205 at 4750.785 kb on + strand at 4750.785 kb on + strand at 4750.785 kb on + strand at 4750.785 kb on + strand at 4750.786 kb on - strand at 4750.786 kb on - strand at 4750.786 kb on - strand at 4750.786 kb on - strand at 4750.786 kb on - strand at 4751.042 kb on + strand, within PP_4206 at 4751.042 kb on + strand, within PP_4206 at 4751.043 kb on - strand, within PP_4206 at 4751.043 kb on - strand, within PP_4206 at 4751.043 kb on - strand, within PP_4206 at 4751.144 kb on + strand, within PP_4206 at 4751.145 kb on - strand, within PP_4206 at 4751.186 kb on + strand, within PP_4206 at 4751.186 kb on + strand, within PP_4206 at 4751.220 kb on + strand, within PP_4206 at 4751.221 kb on - strand, within PP_4206 at 4751.221 kb on - strand, within PP_4206 at 4751.221 kb on - strand, within PP_4206 at 4751.222 kb on + strand, within PP_4206 at 4751.222 kb on + strand, within PP_4206 at 4751.222 kb on + strand, within PP_4206 at 4751.223 kb on - strand, within PP_4206 at 4751.223 kb on - strand, within PP_4206
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 4,749,977 + +0.6 4,749,977 + -0.5 4,749,978 - +0.5 4,749,978 - +1.4 4,749,978 - -1.0 4,749,978 - -2.5 4,750,060 - +0.4 4,750,222 + PP_4204 0.43 +0.6 4,750,222 + PP_4204 0.43 -2.5 4,750,222 + PP_4204 0.43 -4.0 4,750,233 + PP_4204 0.45 -2.4 4,750,234 - PP_4204 0.46 -0.9 4,750,234 - PP_4204 0.46 -3.5 4,750,358 - PP_4204 0.76 +0.6 4,750,389 - PP_4204 0.84 -1.3 4,750,389 - PP_4204 0.84 -1.0 4,750,389 - PP_4204 0.84 -0.7 4,750,393 - PP_4204 0.85 +2.0 4,750,393 - PP_4204 0.85 +0.4 4,750,393 - PP_4204 0.85 +0.7 4,750,395 - PP_4204 0.86 -1.0 4,750,395 - PP_4204 0.86 +1.4 4,750,395 - PP_4204 0.86 -1.4 4,750,395 - PP_4204 0.86 +0.4 4,750,438 + +3.0 4,750,456 + -0.5 4,750,457 - +0.6 4,750,491 + PP_4205 0.12 -2.2 4,750,510 + PP_4205 0.19 +1.1 4,750,511 - PP_4205 0.19 +1.5 4,750,511 - PP_4205 0.19 -3.4 4,750,529 + PP_4205 0.25 -0.9 4,750,529 + PP_4205 0.25 -0.5 4,750,530 - PP_4205 0.25 +1.3 4,750,541 - PP_4205 0.29 +0.3 4,750,568 + -1.5 4,750,588 + PP_4205 0.45 -0.7 4,750,588 + PP_4205 0.45 -0.0 4,750,589 - PP_4205 0.45 -3.0 4,750,785 + -3.1 4,750,785 + -1.0 4,750,785 + -3.2 4,750,785 + +0.8 4,750,786 - -2.9 4,750,786 - -0.1 4,750,786 - -4.7 4,750,786 - +0.0 4,750,786 - +1.8 4,751,042 + PP_4206 0.15 -0.8 4,751,042 + PP_4206 0.15 +0.5 4,751,043 - PP_4206 0.15 -1.4 4,751,043 - PP_4206 0.15 +0.4 4,751,043 - PP_4206 0.15 +0.0 4,751,144 + PP_4206 0.22 -0.2 4,751,145 - PP_4206 0.23 -0.6 4,751,186 + PP_4206 0.26 -0.2 4,751,186 + PP_4206 0.26 -4.7 4,751,220 + PP_4206 0.28 +0.2 4,751,221 - PP_4206 0.28 +0.4 4,751,221 - PP_4206 0.28 +0.6 4,751,221 - PP_4206 0.28 +0.2 4,751,222 + PP_4206 0.28 -2.3 4,751,222 + PP_4206 0.28 -1.7 4,751,222 + PP_4206 0.28 -0.4 4,751,223 - PP_4206 0.28 -3.5 4,751,223 - PP_4206 0.28 +0.2
Or see this region's nucleotide sequence