Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0194 and PP_0195 overlap by 22 nucleotides PP_0195 and PP_0196 are separated by 50 nucleotides
PP_0194: PP_0194 - Transcriptional regulatory protein AlgP, at 244,325 to 245,314
_0194
PP_0195: PP_0195 - conserved protein of unknown function, at 245,293 to 245,772
_0195
PP_0196: PP_0196 - putative of ABC superfamily informational factor: ATP-binding components, at 245,823 to 247,733
_0196
Position (kb) 245
246 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 244.319 kb on + strand at 244.347 kb on + strand at 244.351 kb on + strand at 244.352 kb on - strand at 244.359 kb on + strand at 244.360 kb on - strand at 244.531 kb on + strand, within PP_0194 at 244.532 kb on - strand at 244.625 kb on + strand, within PP_0194 at 244.625 kb on + strand, within PP_0194 at 244.681 kb on - strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.684 kb on + strand, within PP_0194 at 244.685 kb on - strand, within PP_0194 at 245.053 kb on + strand, within PP_0194 at 245.629 kb on + strand, within PP_0195 at 245.630 kb on - strand, within PP_0195 at 245.735 kb on + strand at 245.735 kb on + strand at 245.735 kb on + strand at 245.736 kb on - strand at 245.807 kb on - strand at 245.848 kb on + strand at 245.849 kb on - strand at 245.849 kb on - strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.872 kb on + strand at 245.873 kb on - strand at 245.873 kb on - strand at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.069 kb on + strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.070 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand, within PP_0196 at 246.190 kb on - strand at 246.192 kb on - strand, within PP_0196 at 246.502 kb on - strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.567 kb on + strand, within PP_0196 at 246.607 kb on - strand, within PP_0196 at 246.607 kb on - strand, within PP_0196
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 244,319 + +0.7 244,347 + +0.9 244,351 + +0.3 244,352 - +2.1 244,359 + -1.4 244,360 - -3.2 244,531 + PP_0194 0.21 +2.2 244,532 - -0.6 244,625 + PP_0194 0.30 +1.6 244,625 + PP_0194 0.30 +0.2 244,681 - PP_0194 0.36 -0.5 244,684 + PP_0194 0.36 +1.5 244,684 + PP_0194 0.36 -0.7 244,684 + PP_0194 0.36 -4.3 244,684 + PP_0194 0.36 +1.6 244,685 - PP_0194 0.36 +1.1 245,053 + PP_0194 0.74 -1.4 245,629 + PP_0195 0.70 +0.6 245,630 - PP_0195 0.70 +0.9 245,735 + -0.8 245,735 + +1.7 245,735 + -0.1 245,736 - +0.4 245,807 - -0.4 245,848 + -4.4 245,849 - -2.7 245,849 - -0.3 245,872 + +0.7 245,872 + +2.1 245,872 + +0.0 245,872 + -1.2 245,873 - +0.6 245,873 - -0.0 246,069 + PP_0196 0.13 -2.2 246,069 + PP_0196 0.13 +0.6 246,069 + PP_0196 0.13 +0.6 246,069 + PP_0196 0.13 -0.4 246,069 + PP_0196 0.13 -2.0 246,070 - PP_0196 0.13 +3.6 246,070 - PP_0196 0.13 +1.1 246,190 - PP_0196 0.19 -0.7 246,190 - PP_0196 0.19 -2.5 246,190 - -0.4 246,192 - PP_0196 0.19 -1.9 246,502 - PP_0196 0.36 +1.2 246,567 + PP_0196 0.39 +0.5 246,567 + PP_0196 0.39 -0.4 246,607 - PP_0196 0.41 +0.2 246,607 - PP_0196 0.41 -2.6
Or see this region's nucleotide sequence