Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0149 and PP_0150 overlap by 4 nucleotides PP_0150 and PP_0151 are separated by 36 nucleotides PP_0151 and PP_0152 are separated by 89 nucleotides PP_0152 and PP_0153 are separated by 245 nucleotides
PP_0149: PP_0149 - conserved exported protein of unknown function, at 158,433 to 160,388
_0149
PP_0150: PP_0150 - conserved exported protein of unknown function, at 160,385 to 160,705
_0150
PP_0151: PP_0151 - conserved exported protein of unknown function, at 160,742 to 161,035
_0151
PP_0152: PP_0152 - conserved exported protein of unknown function, at 161,125 to 161,505
_0152
PP_0153: PP_0153 - hypothetical protein, at 161,751 to 161,966
_0153
Position (kb) 160
161
162 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 159.742 kb on + strand, within PP_0149 at 159.743 kb on - strand, within PP_0149 at 159.743 kb on - strand, within PP_0149 at 159.766 kb on + strand, within PP_0149 at 159.766 kb on + strand, within PP_0149 at 159.766 kb on + strand, within PP_0149 at 159.766 kb on + strand, within PP_0149 at 159.767 kb on - strand, within PP_0149 at 159.767 kb on - strand, within PP_0149 at 159.767 kb on - strand, within PP_0149 at 159.767 kb on - strand, within PP_0149 at 159.767 kb on - strand, within PP_0149 at 159.829 kb on + strand, within PP_0149 at 159.829 kb on + strand, within PP_0149 at 159.829 kb on + strand, within PP_0149 at 159.829 kb on + strand, within PP_0149 at 159.830 kb on - strand, within PP_0149 at 159.830 kb on - strand, within PP_0149 at 159.830 kb on - strand, within PP_0149 at 159.830 kb on - strand, within PP_0149 at 160.003 kb on + strand, within PP_0149 at 160.004 kb on - strand, within PP_0149 at 160.140 kb on + strand, within PP_0149 at 160.140 kb on + strand, within PP_0149 at 160.159 kb on + strand, within PP_0149 at 160.274 kb on + strand at 160.275 kb on - strand at 160.397 kb on + strand at 160.413 kb on - strand at 160.459 kb on + strand, within PP_0150 at 160.460 kb on - strand, within PP_0150 at 160.460 kb on - strand, within PP_0150 at 160.481 kb on + strand, within PP_0150 at 160.739 kb on + strand at 160.739 kb on + strand at 160.740 kb on - strand at 160.740 kb on - strand at 160.740 kb on - strand at 160.740 kb on - strand at 160.740 kb on - strand at 160.743 kb on + strand at 160.743 kb on + strand at 160.744 kb on - strand at 160.744 kb on - strand at 160.808 kb on + strand, within PP_0151 at 160.809 kb on - strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.894 kb on + strand, within PP_0151 at 160.941 kb on + strand, within PP_0151 at 160.942 kb on - strand, within PP_0151 at 161.029 kb on - strand at 161.351 kb on - strand, within PP_0152 at 161.433 kb on + strand, within PP_0152 at 161.434 kb on - strand, within PP_0152 at 161.481 kb on - strand at 161.529 kb on + strand at 161.568 kb on + strand at 161.858 kb on + strand, within PP_0153 at 161.858 kb on + strand, within PP_0153 at 161.859 kb on - strand, within PP_0153 at 161.957 kb on + strand at 161.958 kb on - strand at 161.958 kb on - strand at 161.997 kb on + strand at 161.998 kb on - strand at 162.001 kb on + strand at 162.001 kb on + strand at 162.002 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 159,742 + PP_0149 0.67 -1.5 159,743 - PP_0149 0.67 -1.2 159,743 - PP_0149 0.67 -4.3 159,766 + PP_0149 0.68 +1.4 159,766 + PP_0149 0.68 +1.7 159,766 + PP_0149 0.68 +0.7 159,766 + PP_0149 0.68 -3.5 159,767 - PP_0149 0.68 +1.2 159,767 - PP_0149 0.68 -2.8 159,767 - PP_0149 0.68 -0.0 159,767 - PP_0149 0.68 +0.0 159,767 - PP_0149 0.68 +0.3 159,829 + PP_0149 0.71 +0.6 159,829 + PP_0149 0.71 +0.4 159,829 + PP_0149 0.71 +0.8 159,829 + PP_0149 0.71 -0.9 159,830 - PP_0149 0.71 -0.8 159,830 - PP_0149 0.71 +0.3 159,830 - PP_0149 0.71 +0.9 159,830 - PP_0149 0.71 -0.1 160,003 + PP_0149 0.80 +0.6 160,004 - PP_0149 0.80 -0.1 160,140 + PP_0149 0.87 -2.3 160,140 + PP_0149 0.87 +0.3 160,159 + PP_0149 0.88 +1.8 160,274 + +1.0 160,275 - -0.6 160,397 + +1.0 160,413 - +0.6 160,459 + PP_0150 0.23 +0.5 160,460 - PP_0150 0.23 +0.4 160,460 - PP_0150 0.23 +0.1 160,481 + PP_0150 0.30 -1.1 160,739 + +1.4 160,739 + +0.6 160,740 - -0.9 160,740 - -0.4 160,740 - +1.7 160,740 - +3.9 160,740 - +1.5 160,743 + -1.1 160,743 + -1.1 160,744 - +0.0 160,744 - +0.9 160,808 + PP_0151 0.22 -4.0 160,809 - PP_0151 0.23 +0.3 160,894 + PP_0151 0.52 +1.7 160,894 + PP_0151 0.52 +0.8 160,894 + PP_0151 0.52 +2.6 160,941 + PP_0151 0.68 -1.4 160,942 - PP_0151 0.68 -3.6 161,029 - +0.4 161,351 - PP_0152 0.59 -3.1 161,433 + PP_0152 0.81 +1.8 161,434 - PP_0152 0.81 +0.6 161,481 - +0.9 161,529 + -0.6 161,568 + +1.9 161,858 + PP_0153 0.50 +0.2 161,858 + PP_0153 0.50 -0.9 161,859 - PP_0153 0.50 +1.3 161,957 + -4.5 161,958 - +0.3 161,958 - +0.7 161,997 + -0.6 161,998 - +0.0 162,001 + +0.1 162,001 + +1.7 162,002 - -4.2
Or see this region's nucleotide sequence