Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0651 and PP_5453 are separated by 833 nucleotides PP_5453 and PP_0652 are separated by 64 nucleotides
PP_0651: PP_0651 - Acetyltransferase, GNAT family, at 758,579 to 759,028
_0651
PP_5453: PP_5453 - conserved protein of unknown function, at 759,862 to 760,089
_5453
PP_0652: PP_0652 - Gluconate transporter, at 760,154 to 761,539
_0652
Position (kb) 759
760
761 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 758.881 kb on + strand, within PP_0651 at 758.881 kb on + strand, within PP_0651 at 758.881 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.883 kb on + strand, within PP_0651 at 758.884 kb on - strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.913 kb on + strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.914 kb on - strand, within PP_0651 at 758.948 kb on + strand, within PP_0651 at 758.948 kb on + strand, within PP_0651 at 759.011 kb on - strand at 759.026 kb on + strand at 759.026 kb on + strand at 759.027 kb on - strand at 759.042 kb on + strand at 759.042 kb on + strand at 759.047 kb on + strand at 759.048 kb on - strand at 759.048 kb on - strand at 759.070 kb on - strand at 759.070 kb on - strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.092 kb on + strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.093 kb on - strand at 759.096 kb on + strand at 759.096 kb on + strand at 759.096 kb on + strand at 759.097 kb on - strand at 759.097 kb on - strand at 759.118 kb on + strand at 759.118 kb on + strand at 759.119 kb on - strand at 759.119 kb on - strand at 759.202 kb on + strand at 759.226 kb on + strand at 759.276 kb on + strand at 759.277 kb on - strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.288 kb on + strand at 759.289 kb on - strand at 759.294 kb on + strand at 759.294 kb on + strand at 759.295 kb on - strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.310 kb on + strand at 759.311 kb on - strand at 759.313 kb on + strand at 759.313 kb on + strand at 759.374 kb on + strand at 759.375 kb on - strand at 759.375 kb on - strand at 759.396 kb on + strand at 759.419 kb on + strand at 759.434 kb on - strand at 759.607 kb on + strand at 759.608 kb on - strand at 759.608 kb on - strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.675 kb on + strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.676 kb on - strand at 759.760 kb on - strand at 759.810 kb on + strand at 759.811 kb on - strand at 759.811 kb on - strand at 760.055 kb on + strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.056 kb on - strand, within PP_5453 at 760.087 kb on + strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.088 kb on - strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.160 kb on + strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.161 kb on - strand at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.305 kb on + strand, within PP_0652 at 760.306 kb on - strand, within PP_0652 at 760.407 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.433 kb on - strand, within PP_0652 at 760.520 kb on + strand, within PP_0652 at 760.521 kb on - strand, within PP_0652 at 760.920 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.968 kb on + strand, within PP_0652 at 760.969 kb on - strand, within PP_0652 at 761.037 kb on - strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.081 kb on + strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.082 kb on - strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.085 kb on + strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652 at 761.086 kb on - strand, within PP_0652
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 758,881 + PP_0651 0.67 -0.7 758,881 + PP_0651 0.67 +0.2 758,881 + PP_0651 0.67 -1.0 758,883 + PP_0651 0.68 +0.9 758,883 + PP_0651 0.68 -2.1 758,883 + PP_0651 0.68 +1.3 758,884 - PP_0651 0.68 -0.3 758,913 + PP_0651 0.74 -0.3 758,913 + PP_0651 0.74 +0.6 758,913 + PP_0651 0.74 -0.0 758,913 + PP_0651 0.74 +1.8 758,913 + PP_0651 0.74 -0.5 758,914 - PP_0651 0.74 -1.3 758,914 - PP_0651 0.74 +0.1 758,914 - PP_0651 0.74 -1.2 758,914 - PP_0651 0.74 +1.7 758,914 - PP_0651 0.74 +0.3 758,948 + PP_0651 0.82 +0.7 758,948 + PP_0651 0.82 -2.2 759,011 - -1.7 759,026 + -0.3 759,026 + -4.4 759,027 - -2.2 759,042 + +1.1 759,042 + -3.5 759,047 + +0.7 759,048 - +0.0 759,048 - -0.7 759,070 - -0.1 759,070 - +0.5 759,092 + +0.6 759,092 + +1.4 759,092 + -0.3 759,092 + +1.4 759,093 - +0.1 759,093 - -3.8 759,093 - +0.5 759,093 - +1.8 759,096 + +0.4 759,096 + +0.2 759,096 + +0.8 759,097 - -1.7 759,097 - -4.6 759,118 + -3.0 759,118 + +0.3 759,119 - +0.7 759,119 - +0.9 759,202 + +1.8 759,226 + +0.9 759,276 + +0.2 759,277 - -1.0 759,288 + +0.5 759,288 + +0.7 759,288 + +0.9 759,289 - -3.3 759,294 + +0.2 759,294 + +0.3 759,295 - -2.0 759,310 + +0.4 759,310 + -0.4 759,310 + -2.5 759,310 + -0.1 759,311 - +1.1 759,313 + -4.1 759,313 + -1.8 759,374 + +0.2 759,375 - -4.4 759,375 - -1.0 759,396 + -0.3 759,419 + -4.3 759,434 - -1.3 759,607 + -2.2 759,608 - -3.9 759,608 - +0.8 759,675 + +2.0 759,675 + +0.1 759,675 + -0.8 759,675 + +0.9 759,676 - +0.9 759,676 - +0.1 759,676 - -0.9 759,676 - -2.1 759,676 - +1.5 759,676 - -1.8 759,760 - -3.2 759,810 + +0.4 759,811 - -3.1 759,811 - +0.4 760,055 + PP_5453 0.85 +0.7 760,056 - PP_5453 0.85 +1.9 760,056 - PP_5453 0.85 -0.0 760,087 + +1.3 760,088 - +0.4 760,088 - +0.4 760,088 - +1.0 760,160 + -3.2 760,160 + -0.8 760,160 + -1.8 760,160 + +0.9 760,160 + +0.5 760,160 + +0.1 760,161 - +0.5 760,161 - +0.1 760,161 - +0.2 760,161 - +1.3 760,161 - +0.5 760,305 + PP_0652 0.11 -1.1 760,305 + PP_0652 0.11 -1.9 760,305 + PP_0652 0.11 -0.4 760,305 + PP_0652 0.11 -0.1 760,305 + PP_0652 0.11 -2.2 760,306 - PP_0652 0.11 -0.1 760,407 - PP_0652 0.18 +0.6 760,433 - PP_0652 0.20 +0.8 760,433 - PP_0652 0.20 +0.6 760,520 + PP_0652 0.26 +0.5 760,521 - PP_0652 0.26 -0.3 760,920 + PP_0652 0.55 +0.4 760,968 + PP_0652 0.59 -0.9 760,968 + PP_0652 0.59 -1.3 760,968 + PP_0652 0.59 +0.6 760,969 - PP_0652 0.59 -4.2 761,037 - PP_0652 0.64 -3.4 761,081 + PP_0652 0.67 -1.3 761,081 + PP_0652 0.67 +0.1 761,081 + PP_0652 0.67 -0.2 761,081 + PP_0652 0.67 +0.7 761,081 + PP_0652 0.67 +1.2 761,081 + PP_0652 0.67 +1.8 761,081 + PP_0652 0.67 -0.9 761,082 - PP_0652 0.67 -0.9 761,082 - PP_0652 0.67 -3.6 761,082 - PP_0652 0.67 -3.1 761,085 + PP_0652 0.67 -1.8 761,085 + PP_0652 0.67 +0.6 761,085 + PP_0652 0.67 -0.3 761,085 + PP_0652 0.67 +1.5 761,085 + PP_0652 0.67 -3.9 761,085 + PP_0652 0.67 +1.8 761,085 + PP_0652 0.67 -0.9 761,085 + PP_0652 0.67 -4.8 761,085 + PP_0652 0.67 +1.1 761,085 + PP_0652 0.67 +0.8 761,085 + PP_0652 0.67 +0.2 761,085 + PP_0652 0.67 -0.2 761,086 - PP_0652 0.67 +0.5 761,086 - PP_0652 0.67 -4.4 761,086 - PP_0652 0.67 -1.0 761,086 - PP_0652 0.67 +0.6 761,086 - PP_0652 0.67 +0.4 761,086 - PP_0652 0.67 -1.4 761,086 - PP_0652 0.67 +0.7 761,086 - PP_0652 0.67 +0.1 761,086 - PP_0652 0.67 +1.2 761,086 - PP_0652 0.67 -0.6
Or see this region's nucleotide sequence