Strain Fitness in Pseudomonas putida KT2440 around PP_5353

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
6,102,291	+		PP_5352	0.66	-2.3
6,102,291	+		PP_5352	0.66	-2.4
6,102,291	+		PP_5352	0.66	-0.2
6,102,292	-		PP_5352	0.66	+0.9
6,102,334	+		PP_5352	0.68	-2.6
6,102,334	+		PP_5352	0.68	-1.7
6,102,335	-		PP_5352	0.68	-2.8
6,102,335	-		PP_5352	0.68	-3.2
6,102,374	+		PP_5352	0.70	+1.9
6,102,489	+		PP_5352	0.75	+2.6
6,102,490	-		PP_5352	0.75	-2.1
6,102,562	+		PP_5352	0.78	+1.4
6,102,562	+		PP_5352	0.78	-2.4
6,102,562	+		PP_5352	0.78	-2.1
6,102,562	+		PP_5352	0.78	-2.2
6,102,562	+		PP_5352	0.78	-0.6
6,102,563	-		PP_5352	0.78	-2.8
6,102,563	-		PP_5352	0.78	-3.2
6,102,563	-		PP_5352	0.78	-3.4
6,102,563	-		PP_5352	0.78	+0.9
6,102,563	-		PP_5352	0.78	-2.9
6,102,655	+		PP_5352	0.83	+0.2
6,102,655	+		PP_5352	0.83	+1.4
6,102,655	+		PP_5352	0.83	+0.1
6,102,655	+		PP_5352	0.83	-1.7
6,102,655	+		PP_5352	0.83	+2.9
6,102,655	+		PP_5352	0.83	-0.1
6,102,656	-		PP_5352	0.83	-0.9
6,102,656	-		PP_5352	0.83	+0.8
6,102,656	-		PP_5352	0.83	-3.2
6,102,656	-		PP_5352	0.83	-0.7
6,102,656	-		PP_5352	0.83	+0.1
6,102,656	-		PP_5352	0.83	-1.9
6,102,656	-		PP_5352	0.83	-2.3
6,102,656	-		PP_5352	0.83	-2.1
6,102,659	+		PP_5352	0.83	-2.4
6,102,659	+		PP_5352	0.83	+0.3
6,102,659	+		PP_5352	0.83	+0.4
6,102,659	+		PP_5352	0.83	-1.7
6,102,659	+		PP_5352	0.83	-0.6
6,102,659	+		PP_5352	0.83	+0.0
6,102,660	-		PP_5352	0.83	-0.7
6,102,660	-		PP_5352	0.83	-2.9
6,102,660	-		PP_5352	0.83	-4.0
6,102,660	-		PP_5352	0.83	+0.4
6,102,660	-		PP_5352	0.83	-3.2
6,102,660	-		PP_5352	0.83	-1.4
6,102,660	-		PP_5352	0.83	-0.2
6,102,660	-		PP_5352	0.83	-3.1
6,102,660	-		PP_5352	0.83	-3.0
6,102,660	-		PP_5352	0.83	-0.6
6,102,660	-		PP_5352	0.83	-0.3
6,102,697	+		PP_5352	0.84	+1.6
6,102,697	+		PP_5352	0.84	-3.2
6,102,697	+		PP_5352	0.84	+1.0
6,102,698	-		PP_5352	0.85	-0.2
6,102,698	-		PP_5352	0.85	-3.5
6,102,718	+		PP_5352	0.85	-1.7
6,102,733	+		PP_5352	0.86	-2.7
6,102,734	-		PP_5352	0.86	-2.4
6,102,788	+		PP_5352	0.89	+2.3
6,102,788	+		PP_5352	0.89	-0.3
6,102,788	+		PP_5352	0.89	+0.4
6,102,788	+		PP_5352	0.89	+0.8
6,102,788	+		PP_5352	0.89	+0.1
6,102,789	-		PP_5352	0.89	+2.1
6,102,789	-		PP_5352	0.89	-4.1
6,102,789	-		PP_5352	0.89	+0.1
6,102,914	+				-1.9
6,102,990	+				-0.1
6,102,990	+				+1.2
6,103,033	+				+0.9
6,103,066	+				-0.1
6,103,067	-				+1.7
6,103,093	+				+1.0
6,103,093	+				-0.5
6,103,094	-				-0.8
6,103,094	-				+1.1
6,103,094	-				-0.5
6,103,167	+				-1.3
6,103,167	+				+2.1
6,103,167	+				+0.7
6,103,167	+				+0.7
6,103,167	+				-2.6
6,103,167	+				+0.0
6,103,167	+				+0.9
6,103,168	-				+0.8
6,103,168	-				-3.3
6,103,168	-				-4.0
6,103,168	-				+1.3
6,103,168	-				+0.4
6,103,168	-				-4.2
6,103,168	-				+1.0
6,103,168	-				+0.7
6,103,168	-				-0.7
6,103,168	-				+1.4
6,103,168	-				-0.6
6,103,168	-				-0.9
6,103,168	-				+1.3
6,103,168	-				-3.4
6,103,182	+				+0.7
6,103,276	-		PP_5353	0.13	-0.3
6,103,328	+		PP_5353	0.19	-0.2
6,103,821	+		PP_5353	0.76	-2.7
6,103,821	+		PP_5353	0.76	-0.4
6,103,821	+		PP_5353	0.76	-3.2
6,103,821	+		PP_5353	0.76	-0.7
6,103,821	+		PP_5353	0.76	-0.9
6,103,821	+		PP_5353	0.76	-1.0
6,103,821	+		PP_5353	0.76	-3.7
6,103,822	-		PP_5353	0.76	-0.9
6,103,822	-		PP_5353	0.76	+0.0
6,103,825	+		PP_5353	0.77	-1.0
6,103,825	+		PP_5353	0.77	+0.5
6,103,825	+		PP_5353	0.77	-0.5
6,103,826	-		PP_5353	0.77	-1.7
6,103,826	-		PP_5353	0.77	+0.2
6,104,020	+				-0.7
6,104,034	+				+2.2
6,104,034	+				-0.1
6,104,034	+				-3.1
6,104,035	-				+1.2
6,104,087	-				+0.5
6,104,090	-				+0.9
6,104,090	-				+0.9
6,104,090	-				-0.3
6,104,094	+				-0.7
6,104,094	+				-4.0
6,104,094	+				-0.7
6,104,095	-				-2.3
6,104,095	-				-0.3
6,104,095	-				+0.1
6,104,095	-				-0.7
6,104,095	-				+1.4
6,104,095	-				-1.7
6,104,096	+				-0.0
6,104,096	+				-3.6
6,104,097	-				-0.7
6,104,097	-				-1.2
6,104,116	+				+2.8
6,104,116	+				+0.7
6,104,116	+				-0.1
6,104,116	+				-2.6
6,104,116	+				+1.2
6,104,117	-				-0.1
6,104,117	-				+1.9
6,104,246	+		PP_5354	0.27	-0.3
6,104,246	+		PP_5354	0.27	+1.7
6,104,247	-		PP_5354	0.27	-0.1
6,104,281	+		PP_5354	0.36	+0.8
6,104,282	-		PP_5354	0.36	-1.7
6,104,295	+		PP_5354	0.39	-0.3
6,104,295	+		PP_5354	0.39	-0.5
6,104,296	-		PP_5354	0.39	-0.4
6,104,315	+		PP_5354	0.44	+0.3
6,104,316	-		PP_5354	0.44	-0.3
6,104,343	+		PP_5354	0.51	-0.7
6,104,343	+		PP_5354	0.51	-3.0
6,104,343	+		PP_5354	0.51	-1.6
6,104,343	+		PP_5354	0.51	-0.3
6,104,343	+		PP_5354	0.51	+1.6
6,104,343	+		PP_5354	0.51	-4.8
6,104,344	-		PP_5354	0.51	-2.5
6,104,344	-		PP_5354	0.51	-2.5
6,104,344	-		PP_5354	0.51	+0.1
6,104,344	-		PP_5354	0.51	-1.1
6,104,344	-		PP_5354	0.51	+1.4
6,104,344	-		PP_5354	0.51	+0.0
6,104,344	-		PP_5354	0.51	-3.0
6,104,424	+		PP_5354	0.71	-3.7
6,104,424	+		PP_5354	0.71	+0.8
6,104,424	+		PP_5354	0.71	-0.5
6,104,425	-		PP_5354	0.71	-0.8
6,104,425	-		PP_5354	0.71	-0.2
6,104,425	-		PP_5354	0.71	-0.2
6,104,425	-		PP_5354	0.71	-0.1
6,104,427	+		PP_5354	0.71	-2.7
6,104,427	+		PP_5354	0.71	+1.3
6,104,427	+		PP_5354	0.71	-3.5
6,104,428	-		PP_5354	0.72	+0.9
6,104,428	-		PP_5354	0.72	+0.7
6,104,428	-		PP_5354	0.72	+0.4
6,104,548	+				+0.1
6,104,557	+				-0.8
6,104,559	+				-1.6
6,104,559	+				+2.1
6,104,559	+				+2.3
6,104,559	+				+1.0
6,104,559	+				+0.7
6,104,559	+				+1.1
6,104,559	+				+0.4
6,104,559	+				+0.3
6,104,560	-				+2.5
6,104,560	-				-3.9
6,104,560	-				-1.0
6,104,560	-				-2.6
6,104,560	-				-4.6
6,104,560	-				-1.8
6,104,560	-				+0.2
6,104,593	+				-3.9
6,104,593	+				+1.7
6,104,647	-				-0.1
6,104,647	-				+1.5
6,104,647	-				+0.6
6,104,648	+				-0.3
6,104,648	+				-3.3
6,104,649	-				-2.3
6,104,676	-				-0.7
6,104,806	+				-3.1
6,104,807	-				+0.2
6,104,807	-				-5.5
6,104,937	+		PP_5355	0.14	+1.2
6,104,998	+		PP_5355	0.17	+2.0
6,104,998	+		PP_5355	0.17	-4.1
6,104,999	-		PP_5355	0.17	-1.5
6,104,999	-		PP_5355	0.17	+1.3