Strain Fitness in Pseudomonas putida KT2440 around PP_4740

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
5,392,085	+				-1.4
5,392,120	-				-4.3
5,392,135	+				+0.4
5,392,151	+		PP_5710	0.10	+1.6
5,392,154	+		PP_5710	0.11	+1.6
5,392,156	+		PP_5710	0.11	+2.5
5,392,157	-		PP_5710	0.11	-0.8
5,392,157	-		PP_5710	0.11	+1.0
5,392,234	+		PP_5710	0.25	-3.1
5,392,238	+		PP_5710	0.25	+0.7
5,392,238	+		PP_5710	0.25	+1.7
5,392,239	-		PP_5710	0.25	-0.9
5,392,239	-		PP_5710	0.25	+1.3
5,392,310	+		PP_5710	0.38	-1.2
5,392,311	-		PP_5710	0.38	-4.5
5,392,311	-		PP_5710	0.38	+0.8
5,392,311	-		PP_5710	0.38	+0.9
5,392,317	-		PP_5710	0.39	+0.1
5,392,322	+		PP_5710	0.40	+0.9
5,392,322	+		PP_5710	0.40	-3.1
5,392,323	-		PP_5710	0.40	-0.8
5,392,361	-		PP_5710	0.46	+0.8
5,392,368	-		PP_5710	0.48	-3.6
5,392,368	-		PP_5710	0.48	+1.0
5,392,488	-		PP_5710	0.68	-3.0
5,392,545	-		PP_5710	0.78	+2.4
5,392,576	+		PP_5710	0.83	+0.6
5,392,577	-		PP_5710	0.84	+0.0
5,392,605	-		PP_5710	0.88	-3.1
5,392,660	+				-0.2
5,392,661	-				-0.6
5,392,666	+				-4.4
5,392,667	-				-0.1
5,392,667	-				-0.4
5,392,667	-				+1.1
5,392,721	+				-1.0
5,392,732	+				+0.6
5,392,732	+				+1.5
5,392,733	-				-0.1
5,392,792	+				+2.4
5,392,795	+				-0.5
5,392,795	+				+0.7
5,392,796	-				+0.4
5,392,796	-				+0.6
5,392,796	-				-0.9
5,392,809	+				+1.5
5,392,809	+				-3.0
5,392,810	-				+0.7
5,392,878	+				+0.1
5,392,879	-				-0.5
5,392,888	+				-3.6
5,392,889	-				+1.9
5,392,889	-				+0.7
5,392,889	-				-0.6
5,392,918	+				-1.8
5,392,919	-				+2.9
5,392,954	+				-0.7
5,392,954	+				-0.5
5,392,954	+				-2.6
5,392,954	+				-2.7
5,392,955	-				-3.4
5,392,955	-				-0.2
5,393,011	+				-2.1
5,393,011	+				-2.4
5,393,012	-				+0.1
5,393,012	-				+1.6
5,393,012	-				+0.4
5,393,012	-				-0.6
5,393,016	-				-0.2
5,393,016	-				+1.0
5,393,016	-				+1.4
5,393,042	+				-0.7
5,393,051	-				-1.9
5,393,101	+				+1.2
5,393,101	+				-2.7
5,393,101	+				-0.7
5,393,101	+				-0.3
5,393,102	-				+0.4
5,393,102	-				+1.5
5,393,102	-				+0.5
5,393,184	+				+0.7
5,393,185	-				-0.2
5,393,185	-				-0.2
5,393,242	+				+0.0
5,393,243	-				-0.2
5,393,243	-				+0.8
5,393,262	+				-1.3
5,393,286	+				+1.4
5,393,329	+		PP_4740	0.11	+0.6
5,393,448	+		PP_4740	0.16	+0.3
5,393,449	-				+1.3
5,393,516	+		PP_4740	0.19	-0.1
5,393,516	+		PP_4740	0.19	-3.9
5,393,516	+		PP_4740	0.19	+0.2
5,393,517	-		PP_4740	0.19	+2.0
5,393,517	-		PP_4740	0.19	-0.1
5,393,527	+		PP_4740	0.20	-0.3
5,393,528	-		PP_4740	0.20	+0.4
5,393,531	-		PP_4740	0.20	-3.5
5,393,551	-		PP_4740	0.21	+1.3
5,393,560	+		PP_4740	0.21	+1.0
5,393,561	-		PP_4740	0.21	-0.6
5,393,630	+		PP_4740	0.24	-1.3
5,393,631	-		PP_4740	0.24	+1.5
5,393,767	-		PP_4740	0.30	-1.3
5,393,810	+		PP_4740	0.32	+0.7
5,393,811	-		PP_4740	0.32	+0.6
5,393,811	-		PP_4740	0.32	+0.7
5,393,822	-		PP_4740	0.32	+1.6
5,393,842	+		PP_4740	0.33	-3.0
5,393,842	+		PP_4740	0.33	-0.4
5,393,843	-		PP_4740	0.33	-0.6
5,393,843	-		PP_4740	0.33	-0.7
5,393,843	-		PP_4740	0.33	+1.7
5,393,881	+		PP_4740	0.35	+0.9
5,393,882	-		PP_4740	0.35	-0.4
5,393,981	-		PP_4740	0.39	-0.2
5,394,052	+		PP_4740	0.42	+1.4
5,394,052	+		PP_4740	0.42	+0.6
5,394,053	-		PP_4740	0.42	+1.2
5,394,053	-		PP_4740	0.42	+1.3
5,394,070	+		PP_4740	0.43	-3.2
5,394,070	+		PP_4740	0.43	+0.9
5,394,071	-		PP_4740	0.43	+0.7
5,394,071	-		PP_4740	0.43	-3.0
5,394,076	+		PP_4740	0.43	-0.3
5,394,076	+		PP_4740	0.43	+1.2
5,394,076	+		PP_4740	0.43	-2.9
5,394,076	+		PP_4740	0.43	+1.4
5,394,076	+		PP_4740	0.43	-1.4
5,394,076	+		PP_4740	0.43	-0.2
5,394,076	+		PP_4740	0.43	+0.9
5,394,076	+		PP_4740	0.43	-2.6
5,394,077	-		PP_4740	0.43	+0.2
5,394,077	-		PP_4740	0.43	-2.0
5,394,077	-		PP_4740	0.43	+1.5
5,394,120	+		PP_4740	0.45	-0.6
5,394,120	+		PP_4740	0.45	+0.5
5,394,120	+		PP_4740	0.45	+0.1
5,394,121	-		PP_4740	0.45	-2.3
5,394,121	-		PP_4740	0.45	+2.0
5,394,152	+		PP_4740	0.46	-3.3
5,394,152	+		PP_4740	0.46	+1.3
5,394,152	+		PP_4740	0.46	+1.0
5,394,153	-		PP_4740	0.46	-2.9
5,394,153	-		PP_4740	0.46	+1.1
5,394,153	-		PP_4740	0.46	+2.2
5,394,153	-		PP_4740	0.46	-0.1
5,394,153	-		PP_4740	0.46	-0.4
5,394,217	+		PP_4740	0.49	+0.0
5,394,218	-		PP_4740	0.49	-0.9
5,394,218	-		PP_4740	0.49	-1.1
5,394,218	-		PP_4740	0.49	-2.0
5,394,218	-		PP_4740	0.49	-0.1
5,394,218	-		PP_4740	0.49	-0.8
5,394,361	-		PP_4740	0.55	-1.8
5,394,361	-		PP_4740	0.55	+0.7
5,394,415	+		PP_4740	0.57	-1.6
5,394,415	+		PP_4740	0.57	+0.3
5,394,415	+		PP_4740	0.57	+1.5
5,394,416	-		PP_4740	0.57	+1.1
5,394,416	-		PP_4740	0.57	+0.6
5,394,416	-		PP_4740	0.57	-1.2
5,394,416	-		PP_4740	0.57	+0.5
5,394,644	-		PP_4740	0.67	-3.2
5,394,644	-		PP_4740	0.67	-3.6
5,394,658	-		PP_4740	0.68	-0.0
5,394,658	-		PP_4740	0.68	+0.5
5,394,724	+		PP_4740	0.70	-3.6
5,394,724	+		PP_4740	0.70	+0.3
5,394,724	+		PP_4740	0.70	+1.2
5,394,725	-		PP_4740	0.70	-0.1
5,394,746	+		PP_4740	0.71	+0.2
5,394,746	+		PP_4740	0.71	-3.3
5,394,747	-		PP_4740	0.71	+2.6
5,394,747	-		PP_4740	0.71	+1.3
5,394,768	-		PP_4740	0.72	+1.4
5,394,859	+		PP_4740	0.76	+1.3
5,394,859	+		PP_4740	0.76	+1.3
5,394,860	-		PP_4740	0.76	+1.1
5,394,883	+		PP_4740	0.77	-1.2
5,394,907	+		PP_4740	0.78	-1.0
5,394,910	+		PP_4740	0.78	+0.9
5,394,911	-		PP_4740	0.78	+0.3
5,394,911	-		PP_4740	0.78	+0.4
5,394,952	+		PP_4740	0.80	-3.4
5,394,953	-		PP_4740	0.80	+0.1
5,394,953	-		PP_4740	0.80	-3.9
5,394,953	-		PP_4740	0.80	+1.3
5,394,953	-		PP_4740	0.80	+1.8
5,394,953	-		PP_4740	0.80	+0.2
5,394,960	+		PP_4740	0.80	-4.5
5,394,960	+		PP_4740	0.80	-1.1
5,395,200	+				-0.6
5,395,201	-				-0.5
5,395,204	+				+1.6
5,395,204	+				+1.0
5,395,205	-				+2.6
5,395,217	-				+0.6
5,395,217	-				-0.4
5,395,261	+				-4.1
5,395,261	+				-0.6
5,395,320	+				-0.3
5,395,350	+				+0.7
5,395,375	+				+2.1
5,395,386	+				+0.2
5,395,386	+				+0.8
5,395,386	+				+0.2
5,395,387	-				+0.9
5,395,412	-				-2.0
5,395,420	+				-1.7
5,395,421	-				+0.7
5,395,430	+				-2.2
5,395,431	-				-1.5
5,395,467	+				-5.0
5,395,467	+				-0.2
5,395,468	-				-2.2
5,395,468	-				+1.6
5,395,484	+				-0.3
5,395,484	+				+1.1
5,395,484	+				+0.8
5,395,484	+				+0.4
5,395,484	+				+0.2
5,395,484	+				+1.0
5,395,484	+				-2.4
5,395,484	+				-0.9
5,395,485	-				-3.1
5,395,485	-				-1.1
5,395,485	-				-2.0
5,395,522	+				+0.1
5,395,679	+		PP_4741	0.11	-0.4
5,395,679	+		PP_4741	0.11	-0.2
5,395,679	+		PP_4741	0.11	-2.4
5,395,679	+		PP_4741	0.11	-1.7
5,395,679	+		PP_4741	0.11	-0.5
5,395,679	+		PP_4741	0.11	+1.1
5,395,680	-		PP_4741	0.11	+0.3
5,395,680	-		PP_4741	0.11	-4.4
5,395,680	-		PP_4741	0.11	+0.9
5,395,766	-		PP_4741	0.17	-0.6
5,395,766	-		PP_4741	0.17	-0.5
5,395,808	+		PP_4741	0.19	-0.2
5,395,809	-		PP_4741	0.19	-2.6
5,395,809	-		PP_4741	0.19	+0.3
5,395,859	+		PP_4741	0.23	+1.5
5,395,859	+		PP_4741	0.23	+1.4
5,395,859	+		PP_4741	0.23	+0.8
5,395,860	-		PP_4741	0.23	-4.1
5,395,865	+		PP_4741	0.23	+0.9
5,395,865	+		PP_4741	0.23	+0.2
5,395,866	-		PP_4741	0.23	-3.5
5,395,965	-		PP_4741	0.30	-3.8
5,395,965	-		PP_4741	0.30	+0.1
5,396,015	+		PP_4741	0.33	+1.5
5,396,015	+		PP_4741	0.33	+0.0
5,396,015	+		PP_4741	0.33	-0.9
5,396,016	-		PP_4741	0.34	-1.2
5,396,016	-		PP_4741	0.34	+1.1
5,396,016	-		PP_4741	0.34	-2.4
5,396,144	+		PP_4741	0.42	-0.3
5,396,145	-		PP_4741	0.42	-0.3
5,396,145	-		PP_4741	0.42	+1.8
5,396,145	-		PP_4741	0.42	+0.8
5,396,149	-		PP_4741	0.43	-4.1
5,396,149	-		PP_4741	0.43	-0.1
5,396,149	-		PP_4741	0.43	+0.5
5,396,335	+		PP_4741	0.55	+0.3
5,396,336	-		PP_4741	0.55	-0.5
5,396,336	-		PP_4741	0.55	+0.2
5,396,336	-		PP_4741	0.55	-0.4