Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4625 and PP_4626 overlap by 11 nucleotides PP_4626 and PP_4627 are separated by 97 nucleotides PP_4627 and PP_4628 are separated by 21 nucleotides PP_4628 and PP_4629 are separated by 115 nucleotides
PP_4625: PP_4625 - anti-holin regulator of holin CidA, at 5,249,998 to 5,250,684
_4625
PP_4626: PP_4626 - holin regulator of murein hydrolases, at 5,250,674 to 5,251,060
_4626
PP_4627: PP_4627 - transcriptional regulator, LysR family, at 5,251,158 to 5,252,039
_4627
PP_4628: PP_4628 - conserved protein of unknown function, at 5,252,061 to 5,252,516
_4628
PP_4629: PP_4629 - Sensory box protein, at 5,252,632 to 5,253,060
_4629
Position (kb) 5251
5252
5253 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5250.162 kb on + strand, within PP_4625 at 5250.524 kb on + strand, within PP_4625 at 5250.594 kb on - strand, within PP_4625 at 5250.611 kb on + strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.612 kb on - strand, within PP_4625 at 5250.632 kb on + strand at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.731 kb on + strand, within PP_4626 at 5250.732 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.741 kb on - strand, within PP_4626 at 5250.804 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.914 kb on + strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5250.915 kb on - strand, within PP_4626 at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.046 kb on + strand at 5251.047 kb on - strand at 5251.089 kb on + strand at 5251.435 kb on + strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.436 kb on - strand, within PP_4627 at 5251.624 kb on - strand, within PP_4627 at 5251.719 kb on - strand, within PP_4627 at 5251.734 kb on + strand, within PP_4627 at 5251.735 kb on - strand, within PP_4627 at 5251.965 kb on - strand at 5252.215 kb on + strand, within PP_4628 at 5252.216 kb on - strand, within PP_4628 at 5252.216 kb on - strand, within PP_4628 at 5252.219 kb on + strand, within PP_4628 at 5252.219 kb on + strand, within PP_4628 at 5252.227 kb on + strand, within PP_4628 at 5252.348 kb on + strand, within PP_4628 at 5252.486 kb on - strand at 5252.502 kb on - strand at 5252.725 kb on + strand, within PP_4629 at 5252.725 kb on + strand, within PP_4629 at 5252.746 kb on + strand, within PP_4629 at 5252.758 kb on + strand, within PP_4629 at 5252.759 kb on - strand, within PP_4629 at 5252.887 kb on + strand, within PP_4629 at 5252.888 kb on - strand, within PP_4629 at 5252.962 kb on + strand, within PP_4629 at 5252.962 kb on + strand, within PP_4629 at 5252.963 kb on - strand, within PP_4629
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 5,250,162 + PP_4625 0.24 -0.2 5,250,524 + PP_4625 0.77 -0.1 5,250,594 - PP_4625 0.87 +0.8 5,250,611 + PP_4625 0.89 +1.4 5,250,612 - PP_4625 0.89 +1.0 5,250,612 - PP_4625 0.89 -3.8 5,250,632 + +0.9 5,250,731 + PP_4626 0.15 -0.0 5,250,731 + PP_4626 0.15 -0.3 5,250,731 + PP_4626 0.15 +0.0 5,250,732 - PP_4626 0.15 +0.3 5,250,741 - PP_4626 0.17 +0.8 5,250,741 - PP_4626 0.17 -0.4 5,250,804 + PP_4626 0.34 +0.6 5,250,914 + PP_4626 0.62 +0.4 5,250,914 + PP_4626 0.62 -4.4 5,250,914 + PP_4626 0.62 +1.5 5,250,915 - PP_4626 0.62 +1.2 5,250,915 - PP_4626 0.62 -3.1 5,251,046 + +1.1 5,251,046 + +0.2 5,251,046 + -4.4 5,251,047 - -4.5 5,251,089 + -2.0 5,251,435 + PP_4627 0.31 -2.6 5,251,436 - PP_4627 0.32 +1.0 5,251,436 - PP_4627 0.32 +0.4 5,251,436 - PP_4627 0.32 +1.1 5,251,624 - PP_4627 0.53 -3.7 5,251,719 - PP_4627 0.64 +2.8 5,251,734 + PP_4627 0.65 +0.5 5,251,735 - PP_4627 0.65 -0.2 5,251,965 - +0.9 5,252,215 + PP_4628 0.34 -1.8 5,252,216 - PP_4628 0.34 +0.5 5,252,216 - PP_4628 0.34 +0.2 5,252,219 + PP_4628 0.35 +0.8 5,252,219 + PP_4628 0.35 +1.4 5,252,227 + PP_4628 0.36 +1.1 5,252,348 + PP_4628 0.63 -1.1 5,252,486 - -1.5 5,252,502 - -1.3 5,252,725 + PP_4629 0.22 +1.5 5,252,725 + PP_4629 0.22 -0.5 5,252,746 + PP_4629 0.27 +1.9 5,252,758 + PP_4629 0.29 -3.3 5,252,759 - PP_4629 0.30 -4.3 5,252,887 + PP_4629 0.59 -1.7 5,252,888 - PP_4629 0.60 +1.0 5,252,962 + PP_4629 0.77 +0.4 5,252,962 + PP_4629 0.77 -0.8 5,252,963 - PP_4629 0.77 -0.1
Or see this region's nucleotide sequence