Strain Fitness in Pseudomonas putida KT2440 around PP_4591

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
5,208,092	+		PP_4589	0.34	+0.7
5,208,093	-		PP_4589	0.34	+1.2
5,208,093	-		PP_4589	0.34	+1.0
5,208,093	-		PP_4589	0.34	+1.8
5,208,138	-		PP_4589	0.39	-0.4
5,208,228	-		PP_4589	0.48	+1.1
5,208,283	+		PP_4589	0.54	+1.4
5,208,284	-		PP_4589	0.54	-2.6
5,208,391	+		PP_4589	0.66	+0.8
5,208,391	+		PP_4589	0.66	-0.5
5,208,391	+		PP_4589	0.66	-0.2
5,208,392	-		PP_4589	0.66	-0.7
5,208,392	-		PP_4589	0.66	-2.3
5,208,396	+		PP_4589	0.66	+0.4
5,208,396	+		PP_4589	0.66	-0.0
5,208,396	+		PP_4589	0.66	-2.5
5,208,396	+		PP_4589	0.66	-3.5
5,208,396	+		PP_4589	0.66	+0.7
5,208,396	+		PP_4589	0.66	-2.2
5,208,397	-		PP_4589	0.67	+0.8
5,208,397	-		PP_4589	0.67	+1.6
5,208,397	-		PP_4589	0.67	+0.8
5,208,397	-		PP_4589	0.67	-0.2
5,208,397	-		PP_4589	0.67	+0.3
5,208,397	-		PP_4589	0.67	-2.3
5,208,398	+		PP_4589	0.67	-1.0
5,208,398	+		PP_4589	0.67	-3.4
5,208,398	+		PP_4589	0.67	+2.5
5,208,398	+		PP_4589	0.67	+1.0
5,208,398	+		PP_4589	0.67	+0.0
5,208,398	+		PP_4589	0.67	-0.5
5,208,398	+		PP_4589	0.67	+1.1
5,208,399	-		PP_4589	0.67	+0.1
5,208,399	-		PP_4589	0.67	-0.7
5,208,399	-		PP_4589	0.67	+1.2
5,208,399	-		PP_4589	0.67	-3.0
5,208,399	-		PP_4589	0.67	-3.2
5,208,399	-		PP_4589	0.67	+3.1
5,208,399	-		PP_4589	0.67	-2.4
5,208,399	-		PP_4589	0.67	-3.5
5,208,408	+		PP_4589	0.68	+1.0
5,208,408	+		PP_4589	0.68	+0.2
5,208,408	+		PP_4589	0.68	-4.0
5,208,408	+		PP_4589	0.68	-1.2
5,208,408	+		PP_4589	0.68	+0.3
5,208,408	+		PP_4589	0.68	-2.6
5,208,408	+		PP_4589	0.68	-0.5
5,208,408	+		PP_4589	0.68	+0.6
5,208,408	+		PP_4589	0.68	+0.4
5,208,408	+		PP_4589	0.68	-2.0
5,208,409	-		PP_4589	0.68	-0.1
5,208,409	-		PP_4589	0.68	-0.2
5,208,409	-		PP_4589	0.68	-1.7
5,208,409	-		PP_4589	0.68	-0.4
5,208,409	-		PP_4589	0.68	+1.3
5,208,409	-		PP_4589	0.68	+1.1
5,208,410	+		PP_4589	0.68	-1.0
5,208,410	+		PP_4589	0.68	-1.7
5,208,410	+		PP_4589	0.68	+0.2
5,208,411	-		PP_4589	0.68	-1.6
5,208,411	-		PP_4589	0.68	-3.1
5,208,411	-		PP_4589	0.68	-1.5
5,208,411	-		PP_4589	0.68	-0.4
5,208,439	+		PP_4589	0.71	-0.1
5,208,440	-		PP_4589	0.71	+0.1
5,208,440	-		PP_4589	0.71	-2.7
5,208,514	+		PP_4589	0.79	+0.1
5,208,760	+		PP_4590	0.17	+0.6
5,208,760	+		PP_4590	0.17	+0.1
5,208,761	-		PP_4590	0.17	-0.3
5,208,761	-				-1.0
5,208,761	-		PP_4590	0.17	+0.7
5,208,945	+		PP_4590	0.80	+1.0
5,208,945	+		PP_4590	0.80	+0.4
5,208,945	+		PP_4590	0.80	+1.7
5,208,949	+		PP_4590	0.81	+2.6
5,208,949	+		PP_4590	0.81	-0.9
5,208,949	+		PP_4590	0.81	-2.6
5,208,949	+		PP_4590	0.81	-0.6
5,208,949	+		PP_4590	0.81	+1.7
5,208,949	+		PP_4590	0.81	+0.3
5,208,950	-		PP_4590	0.81	+1.2
5,208,950	-		PP_4590	0.81	-3.5
5,208,950	-		PP_4590	0.81	+1.6
5,208,950	-		PP_4590	0.81	+0.5
5,208,950	-		PP_4590	0.81	+1.6
5,208,950	-		PP_4590	0.81	-2.2
5,208,956	-		PP_4590	0.83	+1.3
5,208,956	-		PP_4590	0.83	+0.0
5,208,956	-		PP_4590	0.83	+1.9
5,208,956	-		PP_4590	0.83	-3.2
5,208,983	-				-3.1
5,209,093	-				+1.3
5,209,420	+		PP_4591	0.37	+0.8
5,209,420	+		PP_4591	0.37	-2.2
5,209,427	-		PP_4591	0.38	-0.3
5,209,481	+		PP_4591	0.42	-2.6
5,209,481	+		PP_4591	0.42	-2.0
5,209,482	-		PP_4591	0.42	-3.8
5,209,482	-		PP_4591	0.42	-0.5
5,209,482	-		PP_4591	0.42	-0.6
5,209,606	-		PP_4591	0.53	+0.4
5,209,606	-		PP_4591	0.53	-2.4
5,209,606	-		PP_4591	0.53	-3.6
5,209,776	+		PP_4591	0.68	-1.0
5,209,777	-		PP_4591	0.68	-1.2
5,210,164	+				+0.4
5,210,164	+				+0.1
5,210,164	+				+1.3
5,210,164	+				+1.4
5,210,164	+				-0.6
5,210,164	+				-0.3
5,210,165	-				+0.8
5,210,165	-				+0.6
5,210,165	-				+0.1
5,210,167	-				-0.2
5,210,167	-				-2.0
5,210,168	+				-2.5
5,210,169	-				-0.4
5,210,169	-				+0.5
5,210,262	+				+0.3
5,210,262	+				+1.8
5,210,262	+				-1.5
5,210,263	-				-0.2
5,210,263	-				+0.9
5,210,263	-				+0.4
5,210,263	-				-0.7
5,210,370	+				-1.1
5,210,380	+				+1.2
5,210,381	-				+1.0
5,210,381	-				-0.9
5,210,381	-				-3.4
5,210,381	-				+1.2
5,210,384	+				+0.3
5,210,384	+				-4.1
5,210,385	-				-1.2
5,210,385	-				-2.8
5,210,385	-				-2.9
5,210,385	-				-2.2
5,210,385	-				-1.4
5,210,487	+		PP_4592	0.11	-2.0
5,210,487	+		PP_4592	0.11	-3.3
5,210,487	+		PP_4592	0.11	-0.3
5,210,488	-		PP_4592	0.11	-0.5
5,210,488	-		PP_4592	0.11	+1.6
5,210,516	+		PP_4592	0.12	+0.6
5,210,517	-		PP_4592	0.13	+1.0
5,210,517	-		PP_4592	0.13	+0.0
5,210,517	-		PP_4592	0.13	-0.1
5,210,548	-		PP_4592	0.14	-0.8
5,210,574	+		PP_4592	0.16	-0.3
5,210,574	+		PP_4592	0.16	+1.4
5,210,574	+		PP_4592	0.16	+0.7
5,210,574	+		PP_4592	0.16	+0.8
5,210,607	+		PP_4592	0.18	+0.1
5,210,607	+		PP_4592	0.18	-1.0
5,210,608	-		PP_4592	0.18	-2.3
5,210,680	+		PP_4592	0.22	-0.2
5,210,681	-		PP_4592	0.23	+0.8
5,210,682	+		PP_4592	0.23	+1.5
5,210,683	-		PP_4592	0.23	+0.4
5,210,683	-		PP_4592	0.23	-0.5
5,211,069	+		PP_4592	0.46	+0.4
5,211,069	+		PP_4592	0.46	-0.8
5,211,069	+		PP_4592	0.46	+1.2
5,211,069	+		PP_4592	0.46	-0.1
5,211,069	+		PP_4592	0.46	-1.5