Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0578 and PP_0579 overlap by 4 nucleotides PP_0579 and PP_0580 overlap by 16 nucleotides PP_0580 and PP_0581 are separated by 2 nucleotides
PP_0578: PP_0578 - putative Methyltransferase, at 675,661 to 676,410
_0578
PP_0579: PP_0579 - conserved protein of unknown function, at 676,407 to 676,805
_0579
PP_0580: PP_0580 - MaoC domain protein, at 676,790 to 677,641
_0580
PP_0581: PP_0581 - 3-oxoacyl-(Acyl-carrier-protein) reductase, at 677,644 to 679,017
_0581
Position (kb) 676
677
678 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.834 kb on + strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.835 kb on - strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 675.977 kb on + strand, within PP_0578 at 676.358 kb on + strand at 676.358 kb on + strand at 676.359 kb on - strand at 676.359 kb on - strand at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579 at 676.498 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.724 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.734 kb on + strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.735 kb on - strand, within PP_0579 at 676.816 kb on + strand at 676.816 kb on + strand at 676.816 kb on + strand at 676.817 kb on - strand at 676.817 kb on - strand at 676.935 kb on + strand, within PP_0580 at 676.936 kb on - strand, within PP_0580 at 676.936 kb on - strand, within PP_0580 at 677.054 kb on - strand, within PP_0580 at 677.061 kb on + strand, within PP_0580 at 677.061 kb on + strand, within PP_0580 at 677.062 kb on - strand, within PP_0580 at 677.082 kb on + strand, within PP_0580 at 677.363 kb on + strand, within PP_0580 at 677.364 kb on - strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.442 kb on + strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.443 kb on - strand, within PP_0580 at 677.589 kb on + strand at 677.931 kb on - strand, within PP_0581 at 677.931 kb on - strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.017 kb on + strand, within PP_0581 at 678.018 kb on - strand, within PP_0581 at 678.193 kb on + strand, within PP_0581 at 678.193 kb on + strand at 678.193 kb on + strand, within PP_0581 at 678.194 kb on - strand, within PP_0581 at 678.263 kb on - strand, within PP_0581 at 678.416 kb on - strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.500 kb on + strand, within PP_0581 at 678.501 kb on - strand, within PP_0581 at 678.501 kb on - strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.628 kb on + strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581 at 678.629 kb on - strand, within PP_0581
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 675,834 + PP_0578 0.23 -0.7 675,834 + PP_0578 0.23 +0.9 675,834 + PP_0578 0.23 +0.4 675,835 - PP_0578 0.23 -0.5 675,835 - PP_0578 0.23 -2.6 675,835 - PP_0578 0.23 -2.3 675,977 + PP_0578 0.42 -4.2 675,977 + PP_0578 0.42 +1.4 676,358 + -2.0 676,358 + -4.2 676,359 - -1.2 676,359 - -1.9 676,498 + PP_0579 0.23 +0.9 676,498 + PP_0579 0.23 -1.7 676,498 + PP_0579 0.23 -2.8 676,724 + PP_0579 0.79 -2.6 676,724 + PP_0579 0.79 +0.2 676,724 + PP_0579 0.79 -2.8 676,724 + PP_0579 0.79 +0.4 676,734 + PP_0579 0.82 -0.3 676,734 + PP_0579 0.82 +0.7 676,734 + PP_0579 0.82 -0.4 676,734 + PP_0579 0.82 -0.5 676,734 + PP_0579 0.82 -3.9 676,735 - PP_0579 0.82 +0.0 676,735 - PP_0579 0.82 +0.6 676,735 - PP_0579 0.82 -0.3 676,816 + +2.2 676,816 + +1.7 676,816 + +1.6 676,817 - +1.7 676,817 - -1.0 676,935 + PP_0580 0.17 +0.9 676,936 - PP_0580 0.17 -0.6 676,936 - PP_0580 0.17 -1.1 677,054 - PP_0580 0.31 -1.8 677,061 + PP_0580 0.32 +1.0 677,061 + PP_0580 0.32 -0.4 677,062 - PP_0580 0.32 -1.4 677,082 + PP_0580 0.34 -1.8 677,363 + PP_0580 0.67 +0.3 677,364 - PP_0580 0.67 -0.2 677,442 + PP_0580 0.77 -1.1 677,442 + PP_0580 0.77 -1.0 677,442 + PP_0580 0.77 -0.1 677,442 + PP_0580 0.77 -2.5 677,443 - PP_0580 0.77 -3.6 677,443 - PP_0580 0.77 -3.7 677,443 - PP_0580 0.77 -4.1 677,443 - PP_0580 0.77 -3.9 677,443 - PP_0580 0.77 +1.1 677,589 + -0.7 677,931 - PP_0581 0.21 +1.4 677,931 - PP_0581 0.21 -0.3 678,017 + PP_0581 0.27 +0.7 678,017 + PP_0581 0.27 -0.8 678,017 + PP_0581 0.27 +0.2 678,018 - PP_0581 0.27 +1.8 678,193 + PP_0581 0.40 +0.9 678,193 + -1.4 678,193 + PP_0581 0.40 +0.2 678,194 - PP_0581 0.40 +1.2 678,263 - PP_0581 0.45 +1.8 678,416 - PP_0581 0.56 -1.5 678,500 + PP_0581 0.62 -3.2 678,500 + PP_0581 0.62 -0.3 678,500 + PP_0581 0.62 -3.6 678,500 + PP_0581 0.62 +0.1 678,500 + PP_0581 0.62 -2.7 678,501 - PP_0581 0.62 -1.3 678,501 - PP_0581 0.62 +0.6 678,628 + PP_0581 0.72 +0.5 678,628 + PP_0581 0.72 +1.1 678,628 + PP_0581 0.72 +0.7 678,629 - PP_0581 0.72 +1.8 678,629 - PP_0581 0.72 -3.6 678,629 - PP_0581 0.72 +0.4 678,629 - PP_0581 0.72 +2.4 678,629 - PP_0581 0.72 +0.1 678,629 - PP_0581 0.72 -1.9
Or see this region's nucleotide sequence