Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0397 and PP_0398 are separated by 282 nucleotides PP_0398 and PP_0399 are separated by 14 nucleotides PP_0399 and PP_0400 overlap by 1 nucleotides
PP_0397: PP_0397 - protein kinase, at 482,516 to 484,438
_0397
PP_0398: PP_0398 - Thiosulfate sulfurtransferase GlpE, at 484,721 to 485,053
_0398
PP_0399: PP_0399 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 485,068 to 485,934
_0399
PP_0400: PP_0400 - CO2+/MG2+ efflux protein, at 485,934 to 486,314
_0400
Position (kb) 484
485
486 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 483.741 kb on + strand, within PP_0397 at 483.839 kb on - strand, within PP_0397 at 483.939 kb on + strand, within PP_0397 at 484.041 kb on + strand, within PP_0397 at 484.041 kb on + strand, within PP_0397 at 484.120 kb on - strand, within PP_0397 at 484.120 kb on - strand, within PP_0397 at 484.167 kb on + strand, within PP_0397 at 484.168 kb on - strand, within PP_0397 at 484.235 kb on - strand, within PP_0397 at 484.273 kb on + strand at 484.274 kb on - strand at 484.274 kb on - strand at 484.274 kb on - strand at 484.400 kb on - strand at 484.400 kb on - strand at 484.432 kb on + strand at 484.456 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.520 kb on + strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.521 kb on - strand at 484.522 kb on + strand at 484.542 kb on - strand at 484.542 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.609 kb on + strand at 484.609 kb on + strand at 484.609 kb on + strand at 484.609 kb on + strand at 484.610 kb on - strand at 484.618 kb on - strand at 484.629 kb on - strand at 484.629 kb on - strand at 484.629 kb on - strand at 484.653 kb on - strand at 484.794 kb on + strand, within PP_0398 at 484.817 kb on + strand, within PP_0398 at 484.824 kb on + strand, within PP_0398 at 484.825 kb on - strand, within PP_0398 at 484.858 kb on - strand, within PP_0398 at 485.060 kb on + strand at 485.060 kb on + strand at 485.060 kb on + strand at 485.060 kb on + strand at 485.060 kb on + strand at 485.061 kb on - strand at 485.061 kb on - strand at 485.061 kb on - strand at 485.061 kb on - strand at 485.061 kb on - strand at 485.088 kb on + strand at 485.088 kb on + strand at 485.089 kb on - strand at 485.089 kb on - strand at 485.089 kb on - strand at 486.017 kb on - strand, within PP_0400
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 483,741 + PP_0397 0.64 -4.0 483,839 - PP_0397 0.69 -4.3 483,939 + PP_0397 0.74 -4.0 484,041 + PP_0397 0.79 -3.7 484,041 + PP_0397 0.79 -5.5 484,120 - PP_0397 0.83 -4.5 484,120 - PP_0397 0.83 -4.8 484,167 + PP_0397 0.86 -4.9 484,168 - PP_0397 0.86 -3.0 484,235 - PP_0397 0.89 -3.9 484,273 + -2.2 484,274 - -4.3 484,274 - -3.9 484,274 - -4.4 484,400 - -4.4 484,400 - -3.6 484,432 + -4.3 484,456 + -4.5 484,520 + -4.5 484,520 + -4.5 484,520 + -4.7 484,520 + -4.2 484,520 + -4.9 484,520 + -4.9 484,520 + -1.2 484,520 + -4.3 484,521 - -3.5 484,521 - -4.3 484,521 - -4.5 484,521 - -4.8 484,521 - -4.8 484,521 - -4.2 484,521 - -3.4 484,522 + -3.9 484,542 - -2.3 484,542 - -3.7 484,604 - -5.7 484,604 - +0.7 484,609 + -5.2 484,609 + -2.3 484,609 + -3.9 484,609 + -3.1 484,610 - -4.0 484,618 - -3.3 484,629 - -1.6 484,629 - -0.8 484,629 - -3.8 484,653 - +1.3 484,794 + PP_0398 0.22 -2.0 484,817 + PP_0398 0.29 +1.6 484,824 + PP_0398 0.31 -3.3 484,825 - PP_0398 0.31 +0.4 484,858 - PP_0398 0.41 +1.2 485,060 + -2.0 485,060 + +1.2 485,060 + +0.5 485,060 + -0.8 485,060 + -2.8 485,061 - -2.2 485,061 - +0.8 485,061 - +0.5 485,061 - +2.3 485,061 - +0.3 485,088 + +0.1 485,088 + +0.7 485,089 - +1.8 485,089 - +1.1 485,089 - +0.4 486,017 - PP_0400 0.22 +0.6
Or see this region's nucleotide sequence