Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04510 and PS417_04515 are separated by 242 nucleotides PS417_04515 and PS417_04520 are separated by 134 nucleotides PS417_04520 and PS417_04525 are separated by 260 nucleotides
PS417_04510: PS417_04510 - chemotaxis protein, at 995,339 to 997,477
_04510
PS417_04515: PS417_04515 - peptidase M48, at 997,720 to 998,538
_04515
PS417_04520: PS417_04520 - membrane protein, at 998,673 to 999,257
_04520
PS417_04525: PS417_04525 - 16S rRNA methyltransferase, at 999,518 to 1,000,516
_04525
Position (kb) 997
998
999 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 996.720 kb on + strand, within PS417_04510 at 996.861 kb on + strand, within PS417_04510 at 996.862 kb on - strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.912 kb on + strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.913 kb on - strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 996.915 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.062 kb on + strand, within PS417_04510 at 997.063 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.108 kb on - strand, within PS417_04510 at 997.395 kb on + strand at 997.395 kb on + strand at 997.501 kb on + strand at 997.501 kb on + strand at 997.609 kb on + strand at 997.609 kb on + strand at 997.647 kb on + strand at 997.648 kb on - strand at 997.674 kb on + strand at 997.675 kb on - strand at 997.739 kb on + strand at 997.740 kb on - strand at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.828 kb on + strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.829 kb on - strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.870 kb on + strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 997.871 kb on - strand, within PS417_04515 at 998.090 kb on - strand, within PS417_04515 at 998.291 kb on - strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.371 kb on + strand, within PS417_04515 at 998.449 kb on - strand, within PS417_04515 at 998.516 kb on - strand at 998.543 kb on - strand at 998.562 kb on - strand at 998.608 kb on - strand at 998.608 kb on - strand at 998.674 kb on + strand at 998.674 kb on + strand at 998.675 kb on - strand at 998.675 kb on - strand at 998.704 kb on + strand at 998.705 kb on - strand at 998.705 kb on - strand at 998.705 kb on - strand at 999.262 kb on + strand at 999.263 kb on - strand at 999.335 kb on + strand at 999.335 kb on + strand at 999.336 kb on - strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.405 kb on + strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.406 kb on - strand at 999.447 kb on + strand at 999.448 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 996,720 + PS417_04510 0.65 +0.1 996,861 + PS417_04510 0.71 +0.8 996,862 - PS417_04510 0.71 +0.4 996,912 + PS417_04510 0.74 +1.0 996,912 + PS417_04510 0.74 -0.2 996,912 + PS417_04510 0.74 -0.7 996,913 - PS417_04510 0.74 -2.4 996,913 - PS417_04510 0.74 -0.3 996,915 + PS417_04510 0.74 -2.1 996,915 + PS417_04510 0.74 +0.0 996,915 + PS417_04510 0.74 -1.1 997,062 + PS417_04510 0.81 -0.7 997,062 + PS417_04510 0.81 -1.1 997,063 - PS417_04510 0.81 +1.3 997,108 - PS417_04510 0.83 +1.7 997,108 - PS417_04510 0.83 -2.1 997,395 + -0.8 997,395 + -0.3 997,501 + +0.8 997,501 + -1.1 997,609 + -0.8 997,609 + -1.7 997,647 + -1.7 997,648 - -1.0 997,674 + -0.7 997,675 - -0.9 997,739 + -1.1 997,740 - -0.3 997,828 + PS417_04515 0.13 -0.2 997,828 + PS417_04515 0.13 -2.5 997,828 + PS417_04515 0.13 -2.7 997,828 + PS417_04515 0.13 +0.7 997,829 - PS417_04515 0.13 +0.7 997,829 - PS417_04515 0.13 -2.7 997,870 + PS417_04515 0.18 -2.0 997,870 + PS417_04515 0.18 -0.9 997,870 + PS417_04515 0.18 +3.3 997,870 + PS417_04515 0.18 +0.1 997,870 + PS417_04515 0.18 -2.9 997,871 - PS417_04515 0.18 -0.3 997,871 - PS417_04515 0.18 -1.3 997,871 - PS417_04515 0.18 -0.7 997,871 - PS417_04515 0.18 -1.5 997,871 - PS417_04515 0.18 -0.3 997,871 - PS417_04515 0.18 -0.7 998,090 - PS417_04515 0.45 -1.5 998,291 - PS417_04515 0.70 -2.1 998,371 + PS417_04515 0.79 +1.7 998,371 + PS417_04515 0.79 -3.4 998,371 + PS417_04515 0.79 -2.7 998,449 - PS417_04515 0.89 +0.7 998,516 - +1.1 998,543 - -2.0 998,562 - -1.1 998,608 - +0.2 998,608 - -0.7 998,674 + -1.7 998,674 + +2.5 998,675 - -0.4 998,675 - -0.5 998,704 + +0.1 998,705 - -0.7 998,705 - +0.8 998,705 - +0.2 999,262 + +0.4 999,263 - +0.1 999,335 + -1.7 999,335 + -0.4 999,336 - +0.7 999,405 + +1.1 999,405 + +0.7 999,405 + +0.6 999,405 + -1.1 999,406 - +1.7 999,406 - -0.5 999,406 - -2.2 999,406 - -0.4 999,447 + -0.5 999,448 - -0.3
Or see this region's nucleotide sequence