Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03965 and PS417_03970 are separated by 0 nucleotides PS417_03970 and PS417_03975 are separated by 11 nucleotides
PS417_03965: PS417_03965 - fructose-specific PTS system (fructose 1-phosphate forming), EI, Hpr, and EII-A components <small>(from data)</small>, at 885,528 to 888,386
_03965
PS417_03970: PS417_03970 - 1-phosphofructokinase, at 888,387 to 889,307
_03970
PS417_03975: PS417_03975 - FruA, at 889,319 to 891,028
_03975
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2 at 888.054 kb on + strand, within PS417_03965 at 888.383 kb on - strand at 888.384 kb on + strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 888.385 kb on - strand at 889.057 kb on - strand, within PS417_03970 at 889.305 kb on + strand at 889.306 kb on - strand at 889.306 kb on - strand at 889.511 kb on - strand, within PS417_03975 at 889.625 kb on + strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.626 kb on - strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.663 kb on + strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.664 kb on - strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 889.751 kb on + strand, within PS417_03975 at 890.193 kb on - strand, within PS417_03975 at 890.201 kb on + strand, within PS417_03975 at 890.289 kb on + strand, within PS417_03975
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 888,054 + PS417_03965 0.88 +0.7 888,383 - +0.8 888,384 + +0.1 888,385 - +1.7 888,385 - +0.9 888,385 - +1.7 888,385 - +0.5 889,057 - PS417_03970 0.73 +0.7 889,305 + +0.7 889,306 - +2.0 889,306 - +0.5 889,511 - PS417_03975 0.11 +0.1 889,625 + PS417_03975 0.18 +0.3 889,626 - PS417_03975 0.18 -1.3 889,626 - PS417_03975 0.18 +1.7 889,626 - PS417_03975 0.18 +1.3 889,663 + PS417_03975 0.20 +0.4 889,663 + PS417_03975 0.20 +0.9 889,663 + PS417_03975 0.20 +0.6 889,663 + PS417_03975 0.20 +1.7 889,663 + PS417_03975 0.20 +0.7 889,663 + PS417_03975 0.20 +0.9 889,663 + PS417_03975 0.20 +0.2 889,663 + PS417_03975 0.20 -2.6 889,664 - PS417_03975 0.20 +1.1 889,664 - PS417_03975 0.20 +1.1 889,664 - PS417_03975 0.20 -0.2 889,664 - PS417_03975 0.20 +0.1 889,664 - PS417_03975 0.20 -1.3 889,751 + PS417_03975 0.25 +1.4 889,751 + PS417_03975 0.25 +2.7 890,193 - PS417_03975 0.51 +0.6 890,201 + PS417_03975 0.52 +0.4 890,289 + PS417_03975 0.57 +0.3
Or see this region's nucleotide sequence