Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02640 and PS417_02645 are separated by 154 nucleotides PS417_02645 and PS417_02650 are separated by 179 nucleotides
PS417_02640: PS417_02640 - LysR family transcriptional regulator, at 603,531 to 604,421
_02640
PS417_02645: PS417_02645 - aldehyde dehydrogenase, at 604,576 to 606,066
_02645
PS417_02650: PS417_02650 - FAD-dependent oxidoreductase, at 606,246 to 607,529
_02650
Position (kb) 604
605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 603.610 kb on + strand at 603.610 kb on + strand at 603.611 kb on - strand at 603.613 kb on + strand at 603.741 kb on - strand, within PS417_02640 at 603.741 kb on - strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.742 kb on + strand, within PS417_02640 at 603.743 kb on - strand, within PS417_02640 at 603.770 kb on - strand, within PS417_02640 at 603.788 kb on - strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.976 kb on + strand, within PS417_02640 at 603.977 kb on - strand, within PS417_02640 at 604.109 kb on - strand, within PS417_02640 at 604.159 kb on + strand, within PS417_02640 at 604.166 kb on + strand, within PS417_02640 at 604.512 kb on - strand at 604.810 kb on + strand, within PS417_02645 at 604.811 kb on - strand, within PS417_02645 at 604.934 kb on - strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.971 kb on + strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 604.972 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645 at 605.180 kb on - strand, within PS417_02645 at 605.668 kb on + strand, within PS417_02645 at 605.669 kb on - strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.671 kb on + strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.672 kb on - strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.746 kb on + strand, within PS417_02645 at 605.992 kb on + strand at 606.023 kb on - strand at 606.054 kb on + strand at 606.055 kb on - strand at 606.139 kb on + strand at 606.140 kb on - strand at 606.224 kb on + strand at 606.224 kb on + strand at 606.225 kb on - strand at 606.586 kb on - strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.604 kb on + strand, within PS417_02650 at 606.802 kb on - strand, within PS417_02650 at 606.958 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.009 kb on - strand, within PS417_02650 at 607.011 kb on + strand, within PS417_02650 at 607.012 kb on - strand, within PS417_02650
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 603,610 + +0.7 603,610 + +0.8 603,611 - -0.3 603,613 + -0.6 603,741 - PS417_02640 0.24 -1.6 603,741 - PS417_02640 0.24 +0.4 603,742 + PS417_02640 0.24 -0.2 603,742 + PS417_02640 0.24 +0.2 603,742 + PS417_02640 0.24 -0.5 603,742 + PS417_02640 0.24 -0.5 603,743 - PS417_02640 0.24 +2.3 603,770 - PS417_02640 0.27 -1.7 603,788 - PS417_02640 0.29 -0.2 603,976 + PS417_02640 0.50 -0.9 603,976 + PS417_02640 0.50 -1.1 603,977 - PS417_02640 0.50 +1.1 604,109 - PS417_02640 0.65 +1.0 604,159 + PS417_02640 0.70 -1.0 604,166 + PS417_02640 0.71 -0.1 604,512 - -0.7 604,810 + PS417_02645 0.16 -1.3 604,811 - PS417_02645 0.16 -0.4 604,934 - PS417_02645 0.24 +0.8 604,971 + PS417_02645 0.26 -0.8 604,971 + PS417_02645 0.26 +0.3 604,971 + PS417_02645 0.26 +0.4 604,972 - PS417_02645 0.27 +0.4 604,972 - PS417_02645 0.27 +0.2 605,180 - PS417_02645 0.41 -1.6 605,180 - PS417_02645 0.41 -1.5 605,668 + PS417_02645 0.73 +1.7 605,669 - PS417_02645 0.73 -0.1 605,671 + PS417_02645 0.73 +2.0 605,671 + PS417_02645 0.73 -0.5 605,671 + PS417_02645 0.73 +1.1 605,671 + PS417_02645 0.73 +1.0 605,672 - PS417_02645 0.74 +0.1 605,672 - PS417_02645 0.74 -0.3 605,746 + PS417_02645 0.78 +1.2 605,746 + PS417_02645 0.78 +0.1 605,992 + +0.5 606,023 - -0.4 606,054 + +1.4 606,055 - +0.7 606,139 + -0.9 606,140 - -1.9 606,224 + -0.8 606,224 + -0.9 606,225 - -2.3 606,586 - PS417_02650 0.26 +0.8 606,604 + PS417_02650 0.28 +1.1 606,604 + PS417_02650 0.28 +2.1 606,802 - PS417_02650 0.43 -1.1 606,958 - PS417_02650 0.55 +0.1 607,009 - PS417_02650 0.59 -1.2 607,009 - PS417_02650 0.59 +1.5 607,011 + PS417_02650 0.60 +0.1 607,012 - PS417_02650 0.60 +0.7
Or see this region's nucleotide sequence