Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20135 and PS417_20140 are separated by 141 nucleotides PS417_20140 and PS417_20145 are separated by 25 nucleotides PS417_20145 and PS417_20150 are separated by 91 nucleotides
PS417_20135: PS417_20135 - hypothetical protein, at 4,370,635 to 4,370,823
_20135
PS417_20140: PS417_20140 - nucleoprotein/polynucleotide-associated enzyme, at 4,370,965 to 4,371,510
_20140
PS417_20145: PS417_20145 - nucleoside triphosphate hydrolase, at 4,371,536 to 4,372,369
_20145
PS417_20150: PS417_20150 - (p)ppGpp synthetase, at 4,372,461 to 4,374,704
_20150
Position (kb) 4371
4372
4373 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4370.562 kb on - strand at 4370.580 kb on - strand at 4370.642 kb on + strand at 4370.642 kb on + strand at 4370.670 kb on + strand, within PS417_20135 at 4370.670 kb on + strand at 4370.670 kb on + strand, within PS417_20135 at 4370.670 kb on + strand, within PS417_20135 at 4370.671 kb on - strand, within PS417_20135 at 4370.671 kb on - strand, within PS417_20135 at 4370.671 kb on - strand, within PS417_20135 at 4370.671 kb on - strand at 4370.671 kb on - strand, within PS417_20135 at 4370.714 kb on + strand, within PS417_20135 at 4370.715 kb on - strand, within PS417_20135 at 4370.715 kb on - strand, within PS417_20135 at 4370.766 kb on + strand, within PS417_20135 at 4370.770 kb on + strand, within PS417_20135 at 4370.938 kb on + strand at 4370.938 kb on + strand at 4370.938 kb on + strand at 4370.938 kb on + strand at 4370.938 kb on + strand at 4370.939 kb on - strand at 4370.966 kb on + strand at 4371.218 kb on + strand, within PS417_20140 at 4371.219 kb on - strand, within PS417_20140 at 4371.518 kb on - strand at 4371.525 kb on + strand at 4371.525 kb on + strand at 4371.617 kb on + strand at 4371.890 kb on + strand, within PS417_20145 at 4371.891 kb on - strand, within PS417_20145 at 4372.053 kb on + strand, within PS417_20145 at 4372.053 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.105 kb on + strand, within PS417_20145 at 4372.106 kb on - strand, within PS417_20145 at 4372.165 kb on - strand, within PS417_20145 at 4372.165 kb on - strand at 4372.167 kb on + strand, within PS417_20145 at 4372.167 kb on + strand, within PS417_20145 at 4372.168 kb on - strand, within PS417_20145 at 4372.284 kb on + strand, within PS417_20145 at 4372.284 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.365 kb on + strand at 4372.366 kb on - strand at 4372.366 kb on - strand at 4372.375 kb on + strand at 4372.375 kb on + strand at 4372.389 kb on + strand at 4372.389 kb on + strand at 4372.389 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 4,370,562 - -0.2 4,370,580 - -0.4 4,370,642 + +3.1 4,370,642 + -0.9 4,370,670 + PS417_20135 0.19 -0.7 4,370,670 + +0.6 4,370,670 + PS417_20135 0.19 +1.6 4,370,670 + PS417_20135 0.19 +1.3 4,370,671 - PS417_20135 0.19 -0.7 4,370,671 - PS417_20135 0.19 +1.1 4,370,671 - PS417_20135 0.19 +1.6 4,370,671 - +0.8 4,370,671 - PS417_20135 0.19 -1.8 4,370,714 + PS417_20135 0.42 -0.6 4,370,715 - PS417_20135 0.42 -0.5 4,370,715 - PS417_20135 0.42 +0.6 4,370,766 + PS417_20135 0.69 -0.2 4,370,770 + PS417_20135 0.71 +1.6 4,370,938 + -0.6 4,370,938 + +0.2 4,370,938 + +1.3 4,370,938 + -1.2 4,370,938 + +0.9 4,370,939 - -2.6 4,370,966 + -0.2 4,371,218 + PS417_20140 0.46 -1.1 4,371,219 - PS417_20140 0.47 -0.4 4,371,518 - -0.1 4,371,525 + -2.2 4,371,525 + +0.7 4,371,617 + +0.9 4,371,890 + PS417_20145 0.42 -0.7 4,371,891 - PS417_20145 0.43 -0.2 4,372,053 + PS417_20145 0.62 -1.4 4,372,053 + PS417_20145 0.62 -0.9 4,372,105 + PS417_20145 0.68 -1.4 4,372,105 + PS417_20145 0.68 -1.7 4,372,105 + PS417_20145 0.68 -1.4 4,372,106 - PS417_20145 0.68 -0.2 4,372,165 - PS417_20145 0.75 +1.0 4,372,165 - +0.6 4,372,167 + PS417_20145 0.76 +0.1 4,372,167 + PS417_20145 0.76 -0.8 4,372,168 - PS417_20145 0.76 -0.4 4,372,284 + PS417_20145 0.90 +1.6 4,372,284 + -0.4 4,372,365 + -1.1 4,372,365 + -0.8 4,372,365 + +1.5 4,372,365 + +1.1 4,372,365 + -0.1 4,372,366 - -0.2 4,372,366 - +0.4 4,372,375 + +1.6 4,372,375 + -0.5 4,372,389 + -2.4 4,372,389 + -0.2 4,372,389 + -0.4
Or see this region's nucleotide sequence