Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00625 and PS417_00630 are separated by 14 nucleotides PS417_00630 and PS417_00635 are separated by 1 nucleotides PS417_00635 and PS417_00640 are separated by 11 nucleotides
PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140
_00625
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
PS417_00635: PS417_00635 - sulfonate ABC transporter ATP-binding protein, at 130,182 to 131,033
_00635
PS417_00640: PS417_00640 - ABC transporter permease, at 131,045 to 131,893
_00640
Position (kb) 129
130
131 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 128.204 kb on + strand at 128.207 kb on - strand at 128.261 kb on + strand at 128.262 kb on - strand at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.615 kb on + strand, within PS417_00625 at 128.616 kb on - strand, within PS417_00625 at 128.766 kb on + strand, within PS417_00625 at 128.977 kb on - strand, within PS417_00625 at 129.006 kb on + strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.091 kb on + strand at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 130.142 kb on + strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.143 kb on - strand at 130.398 kb on - strand, within PS417_00635 at 130.545 kb on - strand, within PS417_00635 at 130.587 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 130.905 kb on + strand, within PS417_00635 at 131.028 kb on + strand at 131.029 kb on - strand at 131.058 kb on - strand at 131.058 kb on - strand at 131.070 kb on + strand at 131.071 kb on - strand at 131.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 128,204 + +1.3 128,207 - -3.7 128,261 + +0.5 128,262 - -1.7 128,613 + PS417_00625 0.41 -1.2 128,613 + PS417_00625 0.41 +0.3 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -2.2 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.9 128,614 - PS417_00625 0.41 -4.3 128,614 - PS417_00625 0.41 -1.7 128,614 - PS417_00625 0.41 -4.3 128,614 - PS417_00625 0.41 -3.9 128,614 - PS417_00625 0.41 -5.8 128,615 + PS417_00625 0.41 +1.9 128,616 - PS417_00625 0.41 -3.3 128,766 + PS417_00625 0.58 -1.7 128,977 - PS417_00625 0.82 -1.4 129,006 + PS417_00625 0.85 -0.4 129,007 - PS417_00625 0.85 -3.2 129,007 - PS417_00625 0.85 -2.3 129,007 - PS417_00625 0.85 -0.3 129,091 + -0.2 129,293 + PS417_00630 0.13 +0.8 129,294 - PS417_00630 0.14 -2.5 129,642 - PS417_00630 0.47 -3.8 129,693 - PS417_00630 0.52 -2.7 129,693 - PS417_00630 0.52 -2.9 129,693 - PS417_00630 0.52 -2.7 129,831 - PS417_00630 0.66 -2.8 129,831 - PS417_00630 0.66 -3.1 129,906 - PS417_00630 0.73 -4.7 129,980 + PS417_00630 0.80 -0.0 129,980 + PS417_00630 0.80 -0.1 129,980 + PS417_00630 0.80 +0.1 129,980 + PS417_00630 0.80 -0.2 129,981 - PS417_00630 0.81 -0.6 129,981 - PS417_00630 0.81 -4.0 129,981 - PS417_00630 0.81 -3.1 130,142 + -0.3 130,143 - -1.9 130,143 - -0.8 130,143 - +1.8 130,143 - -2.4 130,143 - -2.8 130,398 - PS417_00635 0.25 -2.7 130,545 - PS417_00635 0.43 -3.3 130,587 + PS417_00635 0.48 -0.7 130,905 + PS417_00635 0.85 +0.8 130,905 + PS417_00635 0.85 +0.6 131,028 + +1.5 131,029 - +0.8 131,058 - -0.1 131,058 - -1.2 131,070 + -0.1 131,071 - +0.6 131,071 - +1.9
Or see this region's nucleotide sequence