Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00620 and PS417_00625 are separated by 366 nucleotides PS417_00625 and PS417_00630 are separated by 14 nucleotides
PS417_00620: PS417_00620 - GntR family transcriptional regulator, at 127,170 to 127,880
_00620
PS417_00625: PS417_00625 - taurine dioxygenase, at 128,247 to 129,140
_00625
PS417_00630: PS417_00630 - nitrate ABC transporter substrate-binding protein, at 129,155 to 130,180
_00630
Position (kb) 128
129
130 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 127.432 kb on + strand, within PS417_00620 at 127.433 kb on - strand, within PS417_00620 at 127.478 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.506 kb on - strand, within PS417_00620 at 127.594 kb on + strand, within PS417_00620 at 127.595 kb on - strand, within PS417_00620 at 127.833 kb on - strand at 127.833 kb on - strand at 127.898 kb on + strand at 127.899 kb on - strand at 127.899 kb on - strand at 127.901 kb on + strand at 127.902 kb on - strand at 127.902 kb on - strand at 127.937 kb on - strand at 127.981 kb on + strand at 127.981 kb on + strand at 127.995 kb on + strand at 127.996 kb on - strand at 128.024 kb on + strand at 128.024 kb on + strand at 128.034 kb on + strand at 128.106 kb on + strand at 128.120 kb on - strand at 128.204 kb on + strand at 128.207 kb on - strand at 128.261 kb on + strand at 128.262 kb on - strand at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.613 kb on + strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.614 kb on - strand, within PS417_00625 at 128.615 kb on + strand, within PS417_00625 at 128.616 kb on - strand, within PS417_00625 at 128.766 kb on + strand, within PS417_00625 at 128.977 kb on - strand, within PS417_00625 at 129.006 kb on + strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.007 kb on - strand, within PS417_00625 at 129.091 kb on + strand at 129.293 kb on + strand, within PS417_00630 at 129.294 kb on - strand, within PS417_00630 at 129.642 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.693 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.831 kb on - strand, within PS417_00630 at 129.906 kb on - strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.980 kb on + strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630 at 129.981 kb on - strand, within PS417_00630
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 127,432 + PS417_00620 0.37 +1.9 127,433 - PS417_00620 0.37 -2.0 127,478 - PS417_00620 0.43 -2.2 127,506 - PS417_00620 0.47 +0.4 127,506 - PS417_00620 0.47 -0.5 127,506 - PS417_00620 0.47 +0.7 127,594 + PS417_00620 0.60 +1.1 127,595 - PS417_00620 0.60 -0.6 127,833 - +0.5 127,833 - +0.2 127,898 + +0.4 127,899 - +0.2 127,899 - -1.6 127,901 + -1.0 127,902 - -2.5 127,902 - -0.9 127,937 - -1.0 127,981 + -0.2 127,981 + -1.0 127,995 + +1.5 127,996 - -3.5 128,024 + -2.9 128,024 + +0.5 128,034 + +0.8 128,106 + -0.1 128,120 - -2.6 128,204 + +1.3 128,207 - -3.7 128,261 + +0.5 128,262 - -1.7 128,613 + PS417_00625 0.41 -1.2 128,613 + PS417_00625 0.41 +0.3 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -2.2 128,613 + PS417_00625 0.41 -0.1 128,613 + PS417_00625 0.41 -0.9 128,614 - PS417_00625 0.41 -4.3 128,614 - PS417_00625 0.41 -1.7 128,614 - PS417_00625 0.41 -4.3 128,614 - PS417_00625 0.41 -3.9 128,614 - PS417_00625 0.41 -5.8 128,615 + PS417_00625 0.41 +1.9 128,616 - PS417_00625 0.41 -3.3 128,766 + PS417_00625 0.58 -1.7 128,977 - PS417_00625 0.82 -1.4 129,006 + PS417_00625 0.85 -0.4 129,007 - PS417_00625 0.85 -3.2 129,007 - PS417_00625 0.85 -2.3 129,007 - PS417_00625 0.85 -0.3 129,091 + -0.2 129,293 + PS417_00630 0.13 +0.8 129,294 - PS417_00630 0.14 -2.5 129,642 - PS417_00630 0.47 -3.8 129,693 - PS417_00630 0.52 -2.7 129,693 - PS417_00630 0.52 -2.9 129,693 - PS417_00630 0.52 -2.7 129,831 - PS417_00630 0.66 -2.8 129,831 - PS417_00630 0.66 -3.1 129,906 - PS417_00630 0.73 -4.7 129,980 + PS417_00630 0.80 -0.0 129,980 + PS417_00630 0.80 -0.1 129,980 + PS417_00630 0.80 +0.1 129,980 + PS417_00630 0.80 -0.2 129,981 - PS417_00630 0.81 -0.6 129,981 - PS417_00630 0.81 -4.0 129,981 - PS417_00630 0.81 -3.1
Or see this region's nucleotide sequence