Strain Fitness in Pseudomonas putida KT2440 around PP_5638

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
4,376,658	-		PP_3852	0.39	-0.0
4,376,708	+		PP_3852	0.42	-1.1
4,376,714	+		PP_3852	0.42	-0.4
4,376,714	+				+1.6
4,376,716	+		PP_3852	0.42	-0.9
4,376,718	+		PP_3852	0.43	+0.7
4,376,719	-		PP_3852	0.43	-0.2
4,376,719	-		PP_3852	0.43	+0.7
4,376,725	+		PP_3852	0.43	-0.5
4,376,821	+		PP_3852	0.50	-0.6
4,376,821	+		PP_3852	0.50	-1.1
4,376,822	-		PP_3852	0.50	+0.4
4,376,851	-		PP_3852	0.52	+0.9
4,376,879	+		PP_3852	0.53	-1.0
4,376,882	+		PP_3852	0.54	-0.4
4,376,882	+		PP_3852	0.54	-0.3
4,376,955	+		PP_3852	0.59	+0.1
4,376,960	+		PP_3852	0.59	-1.2
4,376,960	+		PP_3852	0.59	-1.1
4,376,960	+		PP_3852	0.59	+0.3
4,376,960	+		PP_3852	0.59	-0.5
4,376,960	+		PP_3852	0.59	+0.4
4,376,960	+		PP_3852	0.59	+0.3
4,376,961	-		PP_3852	0.59	+0.4
4,376,971	-		PP_3852	0.60	+0.9
4,376,978	+		PP_3852	0.60	+0.3
4,376,978	+		PP_3852	0.60	-0.1
4,377,004	-		PP_3852	0.62	+0.5
4,377,047	-		PP_3852	0.65	-0.1
4,377,115	-		PP_3852	0.69	-1.2
4,377,115	-		PP_3852	0.69	-1.1
4,377,129	-		PP_3852	0.70	-1.0
4,377,135	+		PP_3852	0.71	+0.4
4,377,135	+		PP_3852	0.71	-0.1
4,377,220	+		PP_3852	0.76	-0.0
4,377,232	+		PP_3852	0.77	-0.2
4,377,232	+		PP_3852	0.77	+0.6
4,377,253	+		PP_3852	0.79	+0.5
4,377,291	+		PP_3852	0.81	+1.5
4,377,291	+		PP_3852	0.81	-3.8
4,377,291	+		PP_3852	0.81	-1.8
4,377,291	+		PP_3852	0.81	+0.8
4,377,292	-		PP_3852	0.81	-3.3
4,377,292	-		PP_3852	0.81	-1.4
4,377,297	-		PP_3852	0.82	-0.5
4,377,297	-		PP_3852	0.82	-2.4
4,377,297	-		PP_3852	0.82	-0.1
4,377,339	+		PP_3852	0.84	+0.7
4,377,339	+		PP_3852	0.84	+0.4
4,377,339	+		PP_3852	0.84	+1.0
4,377,339	+		PP_3852	0.84	-0.1
4,377,345	+		PP_3852	0.85	+0.2
4,377,346	-		PP_3852	0.85	-0.7
4,377,376	+		PP_3852	0.87	+1.0
4,377,430	-				-0.9
4,377,502	+				-0.0
4,377,503	-				+0.4
4,377,503	-				+0.4
4,377,566	+				-1.1
4,377,566	+				-0.1
4,377,566	+				-0.6
4,377,566	+				+0.4
4,377,566	+				-0.3
4,377,567	-				+0.6
4,377,567	-				-0.0
4,377,585	-				+0.7
4,377,626	+				-0.6
4,377,626	+				+0.4
4,377,627	-				+0.5
4,377,627	-				+1.7
4,377,627	-				-0.9
4,377,641	+				+0.2
4,377,641	+				-1.1
4,377,641	+				-1.8
4,377,641	+				-0.9
4,377,642	-				-0.7
4,377,642	-				+1.4
4,377,642	-				+0.9
4,377,642	-				-0.3
4,377,642	-				-1.3
4,377,647	+				-0.2
4,377,647	+				-1.2
4,377,647	+				+0.2
4,377,647	+				+1.2
4,377,693	+				-0.4
4,377,693	+				-0.1
4,377,693	+				-0.4
4,377,693	+				+0.3
4,377,693	+				-0.7
4,377,694	-				-0.5
4,377,694	-				-0.1
4,377,694	-				+0.8
4,377,694	-				-5.1
4,377,695	+				-0.4
4,377,695	+				+0.1
4,377,695	+				+1.1
4,377,695	+				+0.6
4,377,695	+				-0.9
4,377,696	-				-0.1
4,377,696	-				+0.8
4,377,701	+		PP_5638	0.10	+0.3
4,377,701	+		PP_5638	0.10	+1.2
4,377,701	+		PP_5638	0.10	+0.2
4,377,701	+		PP_5638	0.10	+0.8
4,377,701	+		PP_5638	0.10	+0.7
4,377,702	-		PP_5638	0.11	-0.0
4,378,033	+		PP_5638	0.73	+0.9
4,378,034	-		PP_5638	0.73	-0.0
4,378,115	+		PP_5638	0.88	+0.1
4,378,258	+		PP_3854	0.16	-1.8
4,378,258	+		PP_3854	0.16	-0.1
4,378,258	+		PP_3854	0.16	-2.3
4,378,259	-		PP_3854	0.16	+0.3
4,378,456	+		PP_3854	0.52	+0.2
4,378,456	+		PP_3854	0.52	+1.0
4,378,456	+		PP_3854	0.52	+0.5
4,378,456	+		PP_3854	0.52	-1.6
4,378,457	-		PP_3854	0.53	+0.5
4,378,457	-		PP_3854	0.53	+0.9
4,378,519	+		PP_3854	0.64	+0.6
4,378,519	-		PP_3854	0.64	+0.5
4,378,520	-		PP_3854	0.64	+0.2
4,378,528	+		PP_3854	0.66	-0.9
4,378,567	+		PP_3854	0.73	+0.0
4,378,568	-		PP_3854	0.73	-0.1
4,378,609	+		PP_3854	0.81	-0.2
4,378,610	-		PP_3854	0.81	-0.4
4,378,610	-		PP_3854	0.81	-0.9
4,378,659	+				-0.6
4,378,660	-				+0.4
4,378,704	-				+0.3
4,378,704	-				+0.7
4,378,757	+				+0.4
4,378,757	+				+0.3
4,378,764	+				-0.0
4,378,769	+				+0.7
4,378,811	+				+0.7
4,378,811	+				+0.2
4,378,811	+				-0.0
4,378,812	-				+0.2
4,378,812	-				-0.9
4,378,812	-				-0.8
4,378,812	-				+1.1
4,378,812	-				+1.8
4,378,841	+		PP_5639	0.11	-2.1
4,378,915	+		PP_5639	0.31	+0.2
4,378,939	+		PP_5639	0.37	-0.8
4,378,939	+		PP_5639	0.37	+0.2
4,378,940	-		PP_5639	0.38	-1.2
4,378,940	-		PP_5639	0.38	-0.9
4,378,940	-		PP_5639	0.38	-0.3
4,378,940	-		PP_5639	0.38	+0.1
4,378,940	-		PP_5639	0.38	+0.4
4,378,941	+		PP_5639	0.38	-0.1
4,378,955	-		PP_5639	0.42	-1.1
4,378,971	-		PP_5639	0.46	-0.7
4,378,971	-		PP_5639	0.46	+0.6
4,378,971	-		PP_5639	0.46	-0.0
4,378,995	-		PP_5639	0.53	+0.3
4,378,995	-		PP_5639	0.53	+0.9
4,379,008	+		PP_5639	0.56	+0.6
4,379,074	+		PP_5639	0.74	-1.4
4,379,075	-		PP_5639	0.74	+0.4
4,379,075	-		PP_5639	0.74	-0.9
4,379,083	+		PP_5639	0.76	+0.5
4,379,083	+		PP_5639	0.76	+0.0
4,379,084	-		PP_5639	0.77	+0.1
4,379,084	-		PP_5639	0.77	-0.9
4,379,084	-		PP_5639	0.77	-2.6
4,379,084	-		PP_5639	0.77	+0.1
4,379,084	-		PP_5639	0.77	-0.8
4,379,084	-		PP_5639	0.77	+0.5
4,379,090	+		PP_5639	0.78	+0.1
4,379,090	+		PP_5639	0.78	-1.1
4,379,091	-		PP_5639	0.79	+0.9
4,379,105	+		PP_5639	0.82	+0.2