Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4503 and PP_4504 are separated by 162 nucleotides PP_4504 and PP_4505 are separated by 58 nucleotides
PP_4503: PP_4503 - DNA-binding response regulator, at 5,116,912 to 5,117,589
_4503
PP_4504: PP_4504 - conserved exported protein of unknown function, at 5,117,752 to 5,118,168
_4504
PP_4505: PP_4505 - Sensor histidine kinase, at 5,118,227 to 5,119,567
_4505
Position (kb) 5117
5118
5119 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5116.774 kb on - strand at 5116.832 kb on + strand at 5116.832 kb on + strand at 5116.832 kb on + strand at 5116.833 kb on - strand at 5116.833 kb on - strand at 5116.835 kb on - strand at 5116.835 kb on - strand at 5117.060 kb on + strand, within PP_4503 at 5117.259 kb on - strand, within PP_4503 at 5117.318 kb on - strand, within PP_4503 at 5117.473 kb on + strand, within PP_4503 at 5117.474 kb on - strand, within PP_4503 at 5117.549 kb on + strand at 5117.550 kb on - strand at 5117.550 kb on - strand at 5117.572 kb on + strand at 5117.573 kb on - strand at 5117.575 kb on + strand at 5117.575 kb on + strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.576 kb on - strand at 5117.578 kb on + strand at 5117.579 kb on - strand at 5117.579 kb on - strand at 5117.587 kb on + strand at 5117.587 kb on + strand at 5117.658 kb on + strand at 5117.658 kb on + strand at 5117.659 kb on - strand at 5117.669 kb on + strand at 5117.670 kb on - strand at 5117.960 kb on - strand, within PP_4504 at 5117.960 kb on - strand, within PP_4504 at 5118.166 kb on + strand at 5118.166 kb on + strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.167 kb on - strand at 5118.221 kb on + strand at 5118.222 kb on - strand at 5118.393 kb on - strand, within PP_4505 at 5118.587 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.614 kb on + strand, within PP_4505 at 5118.626 kb on + strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.627 kb on - strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.803 kb on + strand, within PP_4505 at 5118.804 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505 at 5118.925 kb on - strand, within PP_4505
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 5,116,774 - -1.5 5,116,832 + -0.5 5,116,832 + +0.8 5,116,832 + -1.9 5,116,833 - -0.3 5,116,833 - +1.0 5,116,835 - +0.1 5,116,835 - +0.6 5,117,060 + PP_4503 0.22 +0.0 5,117,259 - PP_4503 0.51 +0.5 5,117,318 - PP_4503 0.60 +0.0 5,117,473 + PP_4503 0.83 +1.6 5,117,474 - PP_4503 0.83 +0.2 5,117,549 + -0.1 5,117,550 - -0.4 5,117,550 - +0.9 5,117,572 + +0.3 5,117,573 - +1.1 5,117,575 + -2.5 5,117,575 + +0.2 5,117,576 - -0.2 5,117,576 - +0.1 5,117,576 - -0.2 5,117,576 - +0.9 5,117,576 - +0.6 5,117,576 - +0.5 5,117,578 + +0.5 5,117,579 - -1.0 5,117,579 - -0.2 5,117,587 + -0.1 5,117,587 + +0.2 5,117,658 + -0.7 5,117,658 + +0.8 5,117,659 - +0.3 5,117,669 + -0.4 5,117,670 - +0.4 5,117,960 - PP_4504 0.50 +1.2 5,117,960 - PP_4504 0.50 +0.3 5,118,166 + -1.1 5,118,166 + +0.2 5,118,167 - +0.6 5,118,167 - +1.0 5,118,167 - +0.2 5,118,221 + +1.1 5,118,222 - +0.4 5,118,393 - PP_4505 0.12 -1.0 5,118,587 + PP_4505 0.27 -0.3 5,118,614 + PP_4505 0.29 -0.2 5,118,614 + PP_4505 0.29 -2.8 5,118,626 + PP_4505 0.30 -0.3 5,118,627 - PP_4505 0.30 -0.3 5,118,627 - PP_4505 0.30 -0.1 5,118,803 + PP_4505 0.43 -0.3 5,118,803 + PP_4505 0.43 +0.3 5,118,803 + PP_4505 0.43 -1.8 5,118,803 + PP_4505 0.43 -0.6 5,118,803 + PP_4505 0.43 -0.9 5,118,804 - PP_4505 0.43 +0.7 5,118,925 - PP_4505 0.52 -0.1 5,118,925 - PP_4505 0.52 -1.6
Or see this region's nucleotide sequence