Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3641 and PP_3643 are separated by 316 nucleotides PP_3643 and PP_3644 are separated by 80 nucleotides
PP_3641: PP_3641 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 4,136,782 to 4,138,185
_3641
PP_3643: PP_3643 - putative Oxidoreductase, at 4,138,502 to 4,138,987
_3643
PP_3644: PP_3644 - putative Monooxygenase subunit, at 4,139,068 to 4,140,108
_3644
Position (kb) 4138
4139 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4137.506 kb on + strand, within PP_3641 at 4137.516 kb on - strand, within PP_3641 at 4137.516 kb on - strand, within PP_3641 at 4137.516 kb on - strand, within PP_3641 at 4137.681 kb on + strand, within PP_3641 at 4137.681 kb on + strand, within PP_3641 at 4137.751 kb on + strand, within PP_3641 at 4137.842 kb on + strand, within PP_3641 at 4137.842 kb on + strand, within PP_3641 at 4137.842 kb on + strand, within PP_3641 at 4137.843 kb on - strand, within PP_3641 at 4137.881 kb on + strand, within PP_3641 at 4138.133 kb on + strand at 4138.134 kb on - strand at 4138.134 kb on - strand at 4138.211 kb on + strand at 4138.220 kb on - strand at 4138.407 kb on + strand at 4138.494 kb on + strand at 4138.661 kb on + strand, within PP_3643 at 4138.661 kb on + strand, within PP_3643 at 4138.662 kb on - strand, within PP_3643 at 4138.683 kb on + strand, within PP_3643 at 4138.865 kb on + strand, within PP_3643 at 4138.866 kb on - strand, within PP_3643 at 4138.866 kb on - strand, within PP_3643 at 4138.946 kb on + strand at 4138.946 kb on + strand at 4138.946 kb on + strand at 4139.045 kb on + strand at 4139.216 kb on - strand, within PP_3644 at 4139.216 kb on - strand, within PP_3644 at 4139.216 kb on - strand, within PP_3644 at 4139.251 kb on + strand, within PP_3644 at 4139.320 kb on - strand, within PP_3644 at 4139.320 kb on - strand, within PP_3644 at 4139.503 kb on + strand, within PP_3644 at 4139.525 kb on - strand, within PP_3644 at 4139.525 kb on - strand, within PP_3644 at 4139.824 kb on + strand, within PP_3644 at 4139.825 kb on - strand, within PP_3644 at 4139.825 kb on - strand, within PP_3644 at 4139.836 kb on + strand, within PP_3644
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 4,137,506 + PP_3641 0.52 -1.0 4,137,516 - PP_3641 0.52 -1.1 4,137,516 - PP_3641 0.52 -0.1 4,137,516 - PP_3641 0.52 +0.1 4,137,681 + PP_3641 0.64 -0.8 4,137,681 + PP_3641 0.64 -1.1 4,137,751 + PP_3641 0.69 -0.9 4,137,842 + PP_3641 0.75 -0.6 4,137,842 + PP_3641 0.75 -3.5 4,137,842 + PP_3641 0.75 -0.0 4,137,843 - PP_3641 0.76 -0.9 4,137,881 + PP_3641 0.78 -1.1 4,138,133 + +0.3 4,138,134 - +1.2 4,138,134 - -0.1 4,138,211 + -1.0 4,138,220 - -0.2 4,138,407 + +0.9 4,138,494 + -1.0 4,138,661 + PP_3643 0.33 -1.7 4,138,661 + PP_3643 0.33 +1.9 4,138,662 - PP_3643 0.33 -0.5 4,138,683 + PP_3643 0.37 +2.0 4,138,865 + PP_3643 0.75 +0.2 4,138,866 - PP_3643 0.75 -0.0 4,138,866 - PP_3643 0.75 +0.5 4,138,946 + -2.9 4,138,946 + +0.3 4,138,946 + -0.1 4,139,045 + +0.4 4,139,216 - PP_3644 0.14 -0.5 4,139,216 - PP_3644 0.14 +0.2 4,139,216 - PP_3644 0.14 -1.2 4,139,251 + PP_3644 0.18 +0.3 4,139,320 - PP_3644 0.24 +0.0 4,139,320 - PP_3644 0.24 -0.2 4,139,503 + PP_3644 0.42 +0.4 4,139,525 - PP_3644 0.44 +0.5 4,139,525 - PP_3644 0.44 +0.9 4,139,824 + PP_3644 0.73 +0.3 4,139,825 - PP_3644 0.73 +0.6 4,139,825 - PP_3644 0.73 +0.4 4,139,836 + PP_3644 0.74 -0.3
Or see this region's nucleotide sequence