Strain Fitness in Pseudomonas putida KT2440 around PP_1239

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1238 and PP_1239 are separated by 0 nucleotidesPP_1239 and PP_1240 are separated by 30 nucleotidesPP_1240 and PP_t14 are separated by 91 nucleotides PP_1238: PP_1238 - putative Lipoprotein, at 1,415,631 to 1,416,752 _1238 PP_1239: PP_1239 - Metallo-beta-lactamase family protein, at 1,416,753 to 1,417,511 _1239 PP_1240: PP_1240 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,417,542 to 1,418,252 _1240 PP_t14: PP_t14 - tRNA-Ser, at 1,418,344 to 1,418,433 _t14 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1415.844 kb on - strand, within PP_1238at 1416.142 kb on + strand, within PP_1238at 1416.142 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.189 kb on + strand, within PP_1238at 1416.513 kb on + strand, within PP_1238at 1416.514 kb on - strand, within PP_1238at 1416.514 kb on - strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.516 kb on + strand, within PP_1238at 1416.751 kb on - strandat 1416.751 kb on - strandat 1416.973 kb on + strand, within PP_1239at 1416.973 kb on + strand, within PP_1239at 1416.981 kb on + strand, within PP_1239at 1417.061 kb on + strand, within PP_1239at 1417.061 kb on + strand, within PP_1239at 1417.107 kb on + strand, within PP_1239at 1417.176 kb on + strand, within PP_1239at 1417.176 kb on + strand, within PP_1239at 1418.251 kb on - strandat 1418.434 kb on + strandat 1418.434 kb on + strandat 1418.435 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
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1,415,844 - PP_1238 0.19 +0.1
1,416,142 + PP_1238 0.46 -2.4
1,416,142 + PP_1238 0.46 +1.5
1,416,189 + PP_1238 0.50 -1.6
1,416,189 + PP_1238 0.50 +0.9
1,416,189 + PP_1238 0.50 +0.6
1,416,189 + PP_1238 0.50 -0.7
1,416,189 + PP_1238 0.50 -0.6
1,416,189 + PP_1238 0.50 +1.5
1,416,189 + PP_1238 0.50 +0.9
1,416,189 + PP_1238 0.50 +0.2
1,416,513 + PP_1238 0.79 +0.5
1,416,514 - PP_1238 0.79 +3.7
1,416,514 - PP_1238 0.79 +3.7
1,416,516 + PP_1238 0.79 +1.8
1,416,516 + PP_1238 0.79 -0.8
1,416,516 + PP_1238 0.79 +0.7
1,416,516 + PP_1238 0.79 -0.1
1,416,516 + PP_1238 0.79 +0.8
1,416,516 + PP_1238 0.79 +0.4
1,416,516 + PP_1238 0.79 +0.9
1,416,751 - +3.7
1,416,751 - +3.7
1,416,973 + PP_1239 0.29 -2.2
1,416,973 + PP_1239 0.29 +0.4
1,416,981 + PP_1239 0.30 +0.5
1,417,061 + PP_1239 0.41 +1.5
1,417,061 + PP_1239 0.41 +1.1
1,417,107 + PP_1239 0.47 +0.4
1,417,176 + PP_1239 0.56 +0.3
1,417,176 + PP_1239 0.56 +0.3
1,418,251 - +0.5
1,418,434 + -0.5
1,418,434 + -1.3
1,418,435 - +0.4

Or see this region's nucleotide sequence