Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26115 and PS417_26120 are separated by 79 nucleotides PS417_26120 and PS417_26125 are separated by 34 nucleotides PS417_26125 and PS417_26130 are separated by 94 nucleotides
PS417_26115: PS417_26115 - glutamine ABC transporter ATP-binding protein, at 5,644,513 to 5,645,238
_26115
PS417_26120: PS417_26120 - hypothetical protein, at 5,645,318 to 5,645,935
_26120
PS417_26125: PS417_26125 - glutathione S-transferase, at 5,645,970 to 5,646,599
_26125
PS417_26130: PS417_26130 - membrane protein, at 5,646,694 to 5,648,067
_26130
Position (kb) 5645
5646
5647 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5645.151 kb on + strand, within PS417_26115 at 5645.151 kb on + strand, within PS417_26115 at 5645.281 kb on - strand at 5645.299 kb on + strand at 5645.299 kb on + strand at 5645.300 kb on - strand at 5645.519 kb on + strand, within PS417_26120 at 5645.550 kb on + strand at 5645.811 kb on + strand, within PS417_26120 at 5645.812 kb on - strand, within PS417_26120 at 5645.898 kb on - strand at 5645.903 kb on + strand at 5645.904 kb on - strand at 5646.024 kb on - strand at 5646.202 kb on - strand, within PS417_26125 at 5646.484 kb on - strand, within PS417_26125 at 5646.608 kb on - strand at 5646.755 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.768 kb on + strand at 5646.857 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.869 kb on + strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.870 kb on - strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.935 kb on + strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.936 kb on - strand, within PS417_26130 at 5646.977 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand, within PS417_26130 at 5646.994 kb on + strand at 5646.994 kb on + strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5646.995 kb on - strand, within PS417_26130 at 5647.026 kb on - strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.142 kb on + strand, within PS417_26130 at 5647.143 kb on - strand, within PS417_26130 at 5647.169 kb on + strand, within PS417_26130 at 5647.319 kb on - strand, within PS417_26130 at 5647.384 kb on + strand, within PS417_26130
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 5,645,151 + PS417_26115 0.88 -0.1 5,645,151 + PS417_26115 0.88 +0.3 5,645,281 - +0.4 5,645,299 + +1.5 5,645,299 + -2.7 5,645,300 - -0.4 5,645,519 + PS417_26120 0.33 +1.5 5,645,550 + -0.5 5,645,811 + PS417_26120 0.80 +0.1 5,645,812 - PS417_26120 0.80 -0.7 5,645,898 - -2.3 5,645,903 + +0.5 5,645,904 - +0.4 5,646,024 - -1.5 5,646,202 - PS417_26125 0.37 -0.4 5,646,484 - PS417_26125 0.82 -1.2 5,646,608 - -0.3 5,646,755 + +2.1 5,646,768 + -0.1 5,646,768 + -0.1 5,646,768 + -0.3 5,646,857 + PS417_26130 0.12 -2.5 5,646,869 + PS417_26130 0.13 -0.9 5,646,869 + PS417_26130 0.13 +0.3 5,646,869 + PS417_26130 0.13 +0.2 5,646,870 - PS417_26130 0.13 +0.1 5,646,870 - PS417_26130 0.13 +0.5 5,646,935 + PS417_26130 0.18 +0.6 5,646,935 + PS417_26130 0.18 -1.0 5,646,936 - PS417_26130 0.18 -0.3 5,646,936 - PS417_26130 0.18 -1.4 5,646,936 - PS417_26130 0.18 -1.0 5,646,977 + PS417_26130 0.21 +0.2 5,646,994 + +0.5 5,646,994 + PS417_26130 0.22 -0.6 5,646,994 + PS417_26130 0.22 +0.6 5,646,994 + PS417_26130 0.22 -0.1 5,646,994 + +3.5 5,646,994 + PS417_26130 0.22 -0.5 5,646,995 - PS417_26130 0.22 -0.2 5,646,995 - PS417_26130 0.22 +1.1 5,647,026 - PS417_26130 0.24 +1.4 5,647,142 + PS417_26130 0.33 -0.8 5,647,142 + PS417_26130 0.33 +0.7 5,647,142 + PS417_26130 0.33 +0.9 5,647,142 + PS417_26130 0.33 -1.7 5,647,143 - PS417_26130 0.33 +0.3 5,647,169 + PS417_26130 0.35 -0.3 5,647,319 - PS417_26130 0.45 +0.8 5,647,384 + PS417_26130 0.50 -2.3
Or see this region's nucleotide sequence