Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26080 and PS417_26085 are separated by 63 nucleotides PS417_26085 and PS417_26095 are separated by 302 nucleotides
PS417_26080: PS417_26080 - TonB-dependent receptor, at 5,637,216 to 5,639,645
_26080
PS417_26085: PS417_26085 - peptidase, at 5,639,709 to 5,640,812
_26085
PS417_26095: PS417_26095 - ornithine cyclodeaminase, at 5,641,115 to 5,642,143
_26095
Position (kb) 5639
5640
5641 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5638.746 kb on + strand, within PS417_26080 at 5638.750 kb on - strand, within PS417_26080 at 5638.755 kb on + strand, within PS417_26080 at 5638.785 kb on + strand, within PS417_26080 at 5638.785 kb on + strand, within PS417_26080 at 5638.863 kb on - strand, within PS417_26080 at 5638.866 kb on + strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand at 5638.867 kb on - strand, within PS417_26080 at 5638.867 kb on - strand, within PS417_26080 at 5638.935 kb on + strand, within PS417_26080 at 5638.936 kb on - strand, within PS417_26080 at 5638.936 kb on - strand, within PS417_26080 at 5638.963 kb on - strand, within PS417_26080 at 5639.092 kb on + strand, within PS417_26080 at 5639.109 kb on + strand, within PS417_26080 at 5639.257 kb on - strand, within PS417_26080 at 5639.350 kb on - strand, within PS417_26080 at 5639.350 kb on - strand, within PS417_26080 at 5639.404 kb on - strand at 5639.460 kb on + strand at 5639.460 kb on + strand at 5639.461 kb on - strand at 5639.461 kb on - strand at 5639.461 kb on - strand at 5639.487 kb on + strand at 5639.488 kb on - strand at 5639.488 kb on - strand at 5639.565 kb on + strand at 5639.566 kb on - strand at 5639.590 kb on - strand at 5639.590 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.596 kb on - strand at 5639.634 kb on + strand at 5639.635 kb on - strand at 5639.774 kb on - strand at 5639.862 kb on + strand, within PS417_26085 at 5639.946 kb on + strand, within PS417_26085 at 5639.946 kb on + strand, within PS417_26085 at 5640.207 kb on + strand, within PS417_26085 at 5640.208 kb on - strand, within PS417_26085 at 5640.208 kb on - strand, within PS417_26085 at 5640.414 kb on + strand, within PS417_26085 at 5640.654 kb on + strand, within PS417_26085 at 5640.655 kb on - strand, within PS417_26085 at 5640.774 kb on + strand at 5640.774 kb on + strand at 5640.775 kb on - strand at 5640.817 kb on + strand at 5640.818 kb on - strand at 5640.840 kb on + strand at 5640.840 kb on + strand at 5640.840 kb on + strand at 5640.841 kb on - strand at 5640.841 kb on - strand at 5640.841 kb on - strand at 5640.999 kb on + strand at 5640.999 kb on + strand at 5641.062 kb on - strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.130 kb on + strand at 5641.131 kb on - strand at 5641.131 kb on - strand at 5641.131 kb on - strand at 5641.290 kb on - strand, within PS417_26095 at 5641.290 kb on - strand, within PS417_26095 at 5641.338 kb on - strand, within PS417_26095 at 5641.377 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.711 kb on + strand, within PS417_26095 at 5641.712 kb on - strand, within PS417_26095
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 5,638,746 + PS417_26080 0.63 +0.0 5,638,750 - PS417_26080 0.63 -0.6 5,638,755 + PS417_26080 0.63 -0.0 5,638,785 + PS417_26080 0.65 -0.3 5,638,785 + PS417_26080 0.65 -0.3 5,638,863 - PS417_26080 0.68 -1.4 5,638,866 + PS417_26080 0.68 -0.1 5,638,867 - PS417_26080 0.68 -1.5 5,638,867 - PS417_26080 0.68 +1.6 5,638,867 - PS417_26080 0.68 +1.2 5,638,867 - PS417_26080 0.68 -0.4 5,638,867 - +0.5 5,638,867 - PS417_26080 0.68 -1.0 5,638,867 - PS417_26080 0.68 +0.4 5,638,935 + PS417_26080 0.71 +0.3 5,638,936 - PS417_26080 0.71 +0.3 5,638,936 - PS417_26080 0.71 -2.8 5,638,963 - PS417_26080 0.72 -1.1 5,639,092 + PS417_26080 0.77 -1.5 5,639,109 + PS417_26080 0.78 -0.4 5,639,257 - PS417_26080 0.84 -1.2 5,639,350 - PS417_26080 0.88 -0.1 5,639,350 - PS417_26080 0.88 +0.3 5,639,404 - +2.3 5,639,460 + +0.0 5,639,460 + -1.6 5,639,461 - +0.5 5,639,461 - -0.5 5,639,461 - -0.4 5,639,487 + -2.1 5,639,488 - +0.7 5,639,488 - +1.5 5,639,565 + -1.1 5,639,566 - +0.3 5,639,590 - +0.1 5,639,590 - +1.8 5,639,596 - +1.0 5,639,596 - -0.7 5,639,596 - +1.0 5,639,596 - +0.7 5,639,634 + +1.0 5,639,635 - -0.6 5,639,774 - +0.2 5,639,862 + PS417_26085 0.14 -0.2 5,639,946 + PS417_26085 0.21 -3.1 5,639,946 + PS417_26085 0.21 +0.3 5,640,207 + PS417_26085 0.45 -1.0 5,640,208 - PS417_26085 0.45 +2.1 5,640,208 - PS417_26085 0.45 -0.8 5,640,414 + PS417_26085 0.64 -1.7 5,640,654 + PS417_26085 0.86 -0.3 5,640,655 - PS417_26085 0.86 -1.1 5,640,774 + -0.4 5,640,774 + +2.2 5,640,775 - +0.6 5,640,817 + +1.2 5,640,818 - -0.5 5,640,840 + -0.7 5,640,840 + -1.9 5,640,840 + +1.1 5,640,841 - -2.9 5,640,841 - +0.2 5,640,841 - -0.1 5,640,999 + -0.5 5,640,999 + +0.6 5,641,062 - -1.8 5,641,130 + +0.4 5,641,130 + -0.8 5,641,130 + -0.8 5,641,130 + -1.6 5,641,131 - +0.4 5,641,131 - +0.6 5,641,131 - +0.7 5,641,290 - PS417_26095 0.17 -0.1 5,641,290 - PS417_26095 0.17 -2.0 5,641,338 - PS417_26095 0.22 -0.8 5,641,377 + PS417_26095 0.25 -0.6 5,641,711 + PS417_26095 0.58 -2.2 5,641,711 + PS417_26095 0.58 -0.4 5,641,712 - PS417_26095 0.58 +0.8
Or see this region's nucleotide sequence