Experiment: P. simiae OR Antrim MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19210 and PS417_19215 are separated by 91 nucleotides PS417_19215 and PS417_19220 are separated by 102 nucleotides
PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837
_19210
PS417_19215: PS417_19215 - polyphosphate kinase, at 4,163,929 to 4,165,455
_19215
PS417_19220: PS417_19220 - hypothetical protein, at 4,165,558 to 4,170,402
_19220
Position (kb) 4163
4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.248 kb on + strand, within PS417_19210 at 4163.249 kb on - strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.332 kb on + strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.333 kb on - strand, within PS417_19210 at 4163.405 kb on - strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.644 kb on + strand, within PS417_19210 at 4163.826 kb on + strand at 4163.827 kb on - strand at 4163.827 kb on - strand at 4163.842 kb on + strand at 4163.881 kb on - strand at 4163.931 kb on - strand at 4164.117 kb on - strand, within PS417_19215 at 4164.425 kb on + strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.477 kb on - strand, within PS417_19215 at 4164.622 kb on + strand, within PS417_19215 at 4164.623 kb on - strand, within PS417_19215 at 4164.842 kb on + strand, within PS417_19215 at 4165.409 kb on + strand at 4165.409 kb on + strand at 4165.410 kb on - strand at 4165.486 kb on + strand at 4165.582 kb on - strand at 4165.637 kb on - strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.682 kb on + strand at 4165.783 kb on - strand at 4165.783 kb on - strand at 4165.812 kb on + strand at 4166.013 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1 remove 4,163,248 + PS417_19210 0.50 +0.6 4,163,248 + PS417_19210 0.50 -0.3 4,163,248 + PS417_19210 0.50 -0.3 4,163,249 - PS417_19210 0.50 -3.3 4,163,332 + PS417_19210 0.57 -1.4 4,163,332 + PS417_19210 0.57 +0.7 4,163,332 + PS417_19210 0.57 -0.2 4,163,332 + PS417_19210 0.57 -1.5 4,163,333 - PS417_19210 0.57 -0.9 4,163,333 - PS417_19210 0.57 +0.1 4,163,333 - PS417_19210 0.57 +0.7 4,163,333 - PS417_19210 0.57 -1.5 4,163,333 - PS417_19210 0.57 -0.0 4,163,405 - PS417_19210 0.63 +2.6 4,163,644 + PS417_19210 0.84 -2.7 4,163,644 + PS417_19210 0.84 -0.6 4,163,826 + -0.7 4,163,827 - -0.4 4,163,827 - -0.2 4,163,842 + -0.4 4,163,881 - +0.3 4,163,931 - -0.3 4,164,117 - PS417_19215 0.12 +1.0 4,164,425 + PS417_19215 0.32 -2.1 4,164,477 - PS417_19215 0.36 +0.2 4,164,477 - PS417_19215 0.36 -1.3 4,164,622 + PS417_19215 0.45 -1.0 4,164,623 - PS417_19215 0.45 -1.7 4,164,842 + PS417_19215 0.60 -1.7 4,165,409 + +1.8 4,165,409 + -0.4 4,165,410 - +0.2 4,165,486 + -0.7 4,165,582 - -0.4 4,165,637 - -1.7 4,165,682 + -0.6 4,165,682 + +0.9 4,165,682 + -0.1 4,165,783 - +0.8 4,165,783 - -0.1 4,165,812 + +0.9 4,166,013 - -2.7
Or see this region's nucleotide sequence