Strain Fitness in Pseudomonas simiae WCS417 around PS417_05810

Experiment: P. simiae OR Antrim MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05795 and PS417_05800 overlap by 4 nucleotidesPS417_05800 and PS417_05805 overlap by 8 nucleotidesPS417_05805 and PS417_05810 are separated by 128 nucleotidesPS417_05810 and PS417_05815 are separated by 84 nucleotides PS417_05795: PS417_05795 - lysozyme, at 1,292,917 to 1,293,474 _05795 PS417_05800: PS417_05800 - hypothetical protein, at 1,293,471 to 1,293,686 _05800 PS417_05805: PS417_05805 - hypothetical protein, at 1,293,679 to 1,293,885 _05805 PS417_05810: PS417_05810 - damage-inducible protein CinA, at 1,294,014 to 1,294,514 _05810 PS417_05815: PS417_05815 - recombinase RecA, at 1,294,599 to 1,295,657 _05815 Position (kb) 1294 1295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1293.112 kb on + strand, within PS417_05795at 1293.112 kb on + strand, within PS417_05795at 1293.113 kb on - strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.232 kb on + strand, within PS417_05795at 1293.232 kb on + strand, within PS417_05795at 1293.233 kb on - strandat 1293.396 kb on + strand, within PS417_05795at 1293.397 kb on - strand, within PS417_05795at 1293.473 kb on - strandat 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.497 kb on - strand, within PS417_05800at 1293.526 kb on + strand, within PS417_05800at 1293.689 kb on + strandat 1293.689 kb on + strandat 1293.690 kb on - strandat 1293.699 kb on - strandat 1293.851 kb on + strand, within PS417_05805at 1293.909 kb on + strandat 1293.909 kb on + strandat 1294.164 kb on + strand, within PS417_05810at 1294.164 kb on + strand, within PS417_05810at 1294.164 kb on + strand, within PS417_05810at 1294.174 kb on - strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.366 kb on + strand, within PS417_05810at 1294.499 kb on - strandat 1294.547 kb on + strandat 1294.548 kb on - strandat 1294.584 kb on + strandat 1294.788 kb on + strand, within PS417_05815at 1294.903 kb on - strand, within PS417_05815at 1295.078 kb on + strand, within PS417_05815at 1295.078 kb on + strand, within PS417_05815at 1295.078 kb on + strand, within PS417_05815at 1295.079 kb on - strand, within PS417_05815at 1295.248 kb on - strandat 1295.400 kb on + strand, within PS417_05815at 1295.400 kb on + strand, within PS417_05815at 1295.473 kb on - strand, within PS417_05815

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Per-strain Table

Position Strand Gene LocusTag Fraction P. simiae OR Antrim MOI 0.1
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1,293,112 + PS417_05795 0.35 -0.2
1,293,112 + PS417_05795 0.35 +0.2
1,293,113 - PS417_05795 0.35 -0.5
1,293,124 + PS417_05795 0.37 +0.6
1,293,124 + PS417_05795 0.37 -0.3
1,293,124 + PS417_05795 0.37 +0.5
1,293,125 - PS417_05795 0.37 -0.4
1,293,125 - PS417_05795 0.37 -0.3
1,293,125 - PS417_05795 0.37 -0.2
1,293,232 + PS417_05795 0.56 -0.6
1,293,232 + PS417_05795 0.56 -0.1
1,293,233 - -0.2
1,293,396 + PS417_05795 0.86 -0.7
1,293,397 - PS417_05795 0.86 -0.9
1,293,473 - -0.0
1,293,496 + PS417_05800 0.12 -0.1
1,293,496 + PS417_05800 0.12 -0.6
1,293,496 + PS417_05800 0.12 +0.8
1,293,496 + PS417_05800 0.12 +0.6
1,293,496 + PS417_05800 0.12 +0.1
1,293,497 - PS417_05800 0.12 -0.2
1,293,526 + PS417_05800 0.25 -0.5
1,293,689 + -1.9
1,293,689 + -0.0
1,293,690 - +0.7
1,293,699 - +0.3
1,293,851 + PS417_05805 0.83 +0.0
1,293,909 + -3.2
1,293,909 + +3.3
1,294,164 + PS417_05810 0.30 -2.8
1,294,164 + PS417_05810 0.30 -1.7
1,294,164 + PS417_05810 0.30 -0.9
1,294,174 - PS417_05810 0.32 -2.3
1,294,366 + PS417_05810 0.70 -1.2
1,294,366 + PS417_05810 0.70 +0.4
1,294,366 + PS417_05810 0.70 -0.8
1,294,366 + PS417_05810 0.70 +0.9
1,294,366 + PS417_05810 0.70 -2.1
1,294,366 + PS417_05810 0.70 -1.2
1,294,499 - -0.2
1,294,547 + -2.5
1,294,548 - -2.3
1,294,584 + -2.5
1,294,788 + PS417_05815 0.18 -0.2
1,294,903 - PS417_05815 0.29 -0.4
1,295,078 + PS417_05815 0.45 -0.2
1,295,078 + PS417_05815 0.45 -1.0
1,295,078 + PS417_05815 0.45 -0.6
1,295,079 - PS417_05815 0.45 +2.1
1,295,248 - +1.0
1,295,400 + PS417_05815 0.76 -1.8
1,295,400 + PS417_05815 0.76 -1.2
1,295,473 - PS417_05815 0.83 -0.9

Or see this region's nucleotide sequence