Strain Fitness in Pseudomonas putida KT2440 around PP_4446

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
5,038,473	+				-3.0
5,038,473	+				+3.0
5,038,473	+				+0.5
5,038,473	+				+0.7
5,038,548	+		PP_4444	0.36	-2.1
5,038,548	+		PP_4444	0.36	+0.0
5,038,549	-		PP_4444	0.37	+0.1
5,038,566	+		PP_4444	0.44	-0.8
5,038,567	-		PP_4444	0.44	+0.6
5,038,567	-		PP_4444	0.44	-0.3
5,038,567	-		PP_4444	0.44	+1.1
5,038,669	+		PP_4444	0.84	-0.0
5,038,687	-				+4.0
5,038,687	-				-0.6
5,038,712	+				+0.5
5,038,712	+				+1.4
5,038,713	-				-3.4
5,038,713	-				+0.6
5,038,713	-				+0.2
5,038,742	+				+0.7
5,038,743	-				-0.4
5,038,790	+		PP_4445	0.12	+0.1
5,038,793	+		PP_4445	0.12	+0.2
5,038,794	-		PP_4445	0.12	-2.0
5,038,794	-		PP_4445	0.12	-1.0
5,038,794	-		PP_4445	0.12	-0.8
5,038,794	-		PP_4445	0.12	-1.5
5,038,794	-		PP_4445	0.12	+0.2
5,038,872	+		PP_4445	0.23	+1.6
5,038,873	-		PP_4445	0.23	+0.4
5,038,889	+		PP_4445	0.25	+0.3
5,038,997	+		PP_4445	0.39	+0.5
5,039,019	-		PP_4445	0.42	+1.3
5,039,019	-		PP_4445	0.42	+0.8
5,039,111	+		PP_4445	0.54	-1.0
5,039,111	+		PP_4445	0.54	+0.6
5,039,112	-		PP_4445	0.54	+0.3
5,039,112	-		PP_4445	0.54	+0.3
5,039,112	-		PP_4445	0.54	+1.1
5,039,112	-		PP_4445	0.54	+1.0
5,039,112	-		PP_4445	0.54	-1.1
5,039,112	-		PP_4445	0.54	+1.9
5,039,123	+		PP_4445	0.56	-0.1
5,039,124	-		PP_4445	0.56	+1.3
5,039,124	-		PP_4445	0.56	+1.0
5,039,124	-		PP_4445	0.56	-0.1
5,039,124	-		PP_4445	0.56	+0.3
5,039,138	+		PP_4445	0.58	-0.2
5,039,139	-				+5.1
5,039,302	+		PP_4445	0.79	+0.5
5,039,302	+		PP_4445	0.79	+1.6
5,039,345	+		PP_4445	0.85	-2.5
5,039,372	-		PP_4445	0.89	-1.4
5,039,372	-		PP_4445	0.89	-1.0
5,039,408	+				-2.7
5,039,456	+				+0.7
5,039,456	+				+0.5
5,039,456	+				-1.4
5,039,457	-				+0.3
5,039,457	-				-3.2
5,039,460	+				-0.3
5,039,460	+				-0.1
5,039,461	-				+0.7
5,039,461	-				+0.6
5,039,461	-				+2.7
5,039,461	-				-1.1
5,039,461	-				+1.6
5,039,461	-				-1.5
5,039,461	-				+0.9
5,039,464	+				+0.6
5,039,464	+				-2.9
5,039,464	+				+1.3
5,039,464	+				-2.0
5,039,464	+				+0.2
5,039,465	-				-3.7
5,039,465	-				-2.0
5,039,485	+				+0.6
5,039,485	+				-0.2
5,039,507	+		PP_4446	0.11	+1.8
5,039,508	-		PP_4446	0.11	+0.9
5,039,611	+		PP_4446	0.20	+0.4
5,039,762	+		PP_4446	0.34	+1.2
5,039,762	+		PP_4446	0.34	+1.6
5,039,765	+		PP_4446	0.34	-0.4
5,039,765	+		PP_4446	0.34	+0.3
5,039,765	+		PP_4446	0.34	+1.0
5,039,765	+				-0.9
5,039,766	-				+1.1
5,039,766	-		PP_4446	0.34	-1.1
5,039,807	+		PP_4446	0.38	+0.9
5,039,807	+		PP_4446	0.38	-1.5
5,039,811	+		PP_4446	0.38	+0.4
5,039,811	+		PP_4446	0.38	-1.6
5,039,812	-		PP_4446	0.38	+2.4
5,039,987	+		PP_4446	0.54	-1.9
5,039,987	+		PP_4446	0.54	+1.2
5,039,987	+		PP_4446	0.54	+1.3
5,039,987	+		PP_4446	0.54	+1.3
5,039,988	-		PP_4446	0.54	-0.4
5,039,991	+		PP_4446	0.54	+3.3
5,039,991	+		PP_4446	0.54	+0.6
5,039,991	+		PP_4446	0.54	+1.9
5,039,991	+		PP_4446	0.54	+1.1
5,039,992	-		PP_4446	0.54	-2.4
5,039,992	-		PP_4446	0.54	-0.4
5,040,046	+		PP_4446	0.59	+0.1
5,040,046	+		PP_4446	0.59	-0.7
5,040,047	-		PP_4446	0.59	-0.1
5,040,055	+		PP_4446	0.60	-2.0
5,040,055	+				-0.3
5,040,056	-		PP_4446	0.60	+0.9
5,040,059	+		PP_4446	0.60	-0.8
5,040,059	+		PP_4446	0.60	+2.5
5,040,060	-		PP_4446	0.60	+0.1
5,040,060	-		PP_4446	0.60	-1.5
5,040,134	+		PP_4446	0.67	+0.2
5,040,134	+		PP_4446	0.67	+0.3
5,040,135	-		PP_4446	0.67	+0.8
5,040,162	-		PP_4446	0.70	+1.9
5,040,245	+		PP_4446	0.77	-2.0
5,040,248	+		PP_4446	0.77	+0.8
5,040,256	+		PP_4446	0.78	-2.2
5,040,262	-		PP_4446	0.78	+0.0
5,040,323	+		PP_4446	0.84	-0.0
5,040,324	-		PP_4446	0.84	-0.5
5,040,324	-		PP_4446	0.84	-1.5
5,040,370	+		PP_4446	0.88	+0.4
5,040,370	+		PP_4446	0.88	-0.7
5,040,371	-		PP_4446	0.88	-3.4
5,040,371	-		PP_4446	0.88	+2.3
5,040,406	-				+0.5
5,040,406	-				-0.5
5,040,469	+				-0.6
5,040,470	-				+0.6
5,040,470	-				-0.2
5,040,470	-				+0.4
5,040,470	-				+1.6
5,040,470	-				+0.2
5,040,586	+				+1.6
5,040,586	+				-0.1
5,040,587	-				+0.7
5,040,613	-				+2.7
5,040,758	+		PP_5680	0.34	+0.3
5,040,759	-		PP_5680	0.34	+1.6
5,040,759	-		PP_5680	0.34	-0.1
5,040,759	-		PP_5680	0.34	+0.3
5,040,759	-		PP_5680	0.34	+0.6
5,040,766	+		PP_5680	0.36	-1.3
5,040,766	+		PP_5680	0.36	-0.1
5,040,766	+		PP_5680	0.36	-1.9
5,040,767	-		PP_5680	0.36	+1.1
5,040,767	-		PP_5680	0.36	-0.4
5,040,767	-		PP_5680	0.36	+0.9
5,040,767	-		PP_5680	0.36	-1.7
5,040,767	-		PP_5680	0.36	-1.7
5,040,944	+		PP_5680	0.80	-0.0
5,040,944	+				+0.7
5,040,945	-		PP_5680	0.80	+1.0
5,040,991	+				+0.7
5,041,001	+				+1.3
5,041,002	-				+2.8
5,041,002	-				+0.6
5,041,010	+				+1.2
5,041,030	+				+0.2
5,041,097	-				+0.9
5,041,123	+				-0.2
5,041,135	+				+1.3
5,041,135	+				+0.0
5,041,135	+				+1.9
5,041,142	+				+0.3
5,041,143	-				+1.3
5,041,143	-				+1.0
5,041,143	-				-0.4
5,041,153	+				-1.1
5,041,153	+				-0.3
5,041,153	+				+0.2
5,041,153	+				+0.8
5,041,154	-				-0.4
5,041,201	-				-0.2
5,041,250	+				-0.5
5,041,372	-				+1.1
5,041,446	-				-1.0
5,041,446	-				-1.4
5,041,449	+				-0.6
5,041,455	+				-1.0
5,041,455	+				-1.7
5,041,456	-				-0.8