Strain Fitness in Pseudomonas putida KT2440 around PP_4303

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
4,893,736	+				+2.0
4,893,736	+				-3.0
4,893,736	+				+1.0
4,893,737	-				+0.5
4,893,737	-				-0.0
4,893,932	-		PP_4302	0.23	+1.5
4,893,961	+		PP_4302	0.26	+1.6
4,893,967	+		PP_4302	0.27	+0.4
4,893,967	+		PP_4302	0.27	-2.5
4,893,968	-		PP_4302	0.27	+1.5
4,893,968	-		PP_4302	0.27	-1.0
4,893,977	+		PP_4302	0.28	+1.5
4,893,977	+		PP_4302	0.28	-2.1
4,894,022	+		PP_4302	0.33	-2.4
4,894,111	+		PP_4302	0.43	+0.0
4,894,111	+		PP_4302	0.43	-2.6
4,894,112	-		PP_4302	0.43	+1.0
4,894,127	+		PP_4302	0.45	+1.3
4,894,127	+		PP_4302	0.45	-1.0
4,894,128	-		PP_4302	0.45	+0.7
4,894,198	+		PP_4302	0.53	+0.0
4,894,199	-		PP_4302	0.53	-0.6
4,894,291	+		PP_4302	0.64	-0.1
4,894,292	-		PP_4302	0.64	-2.9
4,894,373	+		PP_4302	0.73	-0.5
4,894,374	-		PP_4302	0.73	+0.5
4,894,374	-		PP_4302	0.73	-1.5
4,894,475	+		PP_4302	0.85	+0.0
4,894,476	-		PP_4302	0.85	+1.6
4,894,476	-		PP_4302	0.85	+0.7
4,894,476	-		PP_4302	0.85	-0.1
4,894,587	+				-0.9
4,894,588	-				-1.8
4,894,588	-				+1.3
4,894,588	-				+0.6
4,894,588	-				-0.9
4,894,588	-				-0.7
4,894,588	-				-1.9
4,894,589	+				+1.6
4,894,589	+				-1.0
4,894,590	-				+0.2
4,894,598	+				-1.0
4,894,602	+				+0.4
4,894,602	+				-2.5
4,894,602	+				-2.2
4,894,603	-				-1.8
4,894,603	-				-1.0
4,894,603	-				+0.1
4,894,660	+				+0.7
4,894,660	+				-0.1
4,894,661	-				-1.2
4,894,661	-				-1.0
4,894,663	-				+1.4
4,894,698	+				-1.7
4,894,698	+				-0.9
4,894,698	+				+0.1
4,894,698	+				-0.2
4,894,698	+				+1.3
4,894,699	-				+1.0
4,894,844	+		PP_4303	0.25	-2.0
4,894,845	-		PP_4303	0.25	-0.8
4,894,871	+		PP_4303	0.29	+0.2
4,894,871	+		PP_4303	0.29	+1.2
4,894,872	-		PP_4303	0.29	-3.4
4,894,900	-		PP_4303	0.33	+0.1
4,894,917	+		PP_4303	0.35	-1.7
4,894,918	-		PP_4303	0.35	+2.8
4,894,918	-		PP_4303	0.35	-2.7
4,894,918	-		PP_4303	0.35	+0.2
4,894,949	+		PP_4303	0.39	+0.1
4,895,005	+		PP_4303	0.47	-1.7
4,895,005	+		PP_4303	0.47	+4.9
4,895,006	-		PP_4303	0.47	+2.2
4,895,006	-		PP_4303	0.47	-0.2
4,895,058	+		PP_4303	0.54	+0.2
4,895,162	-		PP_4303	0.68	-0.5
4,895,167	+		PP_4303	0.69	-1.1
4,895,167	+		PP_4303	0.69	-0.1
4,895,167	+		PP_4303	0.69	+0.4
4,895,167	+		PP_4303	0.69	+0.5
4,895,167	+		PP_4303	0.69	+0.0
4,895,167	+		PP_4303	0.69	+1.2
4,895,167	+		PP_4303	0.69	-1.9
4,895,168	-		PP_4303	0.69	+4.9
4,895,168	-		PP_4303	0.69	+0.8
4,895,168	-		PP_4303	0.69	+2.5
4,895,168	-		PP_4303	0.69	+0.2
4,895,168	-		PP_4303	0.69	+0.8
4,895,168	-		PP_4303	0.69	-0.1
4,895,168	-				+2.0
4,895,225	+		PP_4303	0.76	+1.8
4,895,226	-		PP_4303	0.77	+2.4
4,895,226	-		PP_4303	0.77	+0.2
4,895,226	-		PP_4303	0.77	+2.7
4,895,239	+		PP_4303	0.78	+1.4
4,895,239	+		PP_4303	0.78	-1.6
4,895,239	+		PP_4303	0.78	+1.3
4,895,240	-		PP_4303	0.78	-2.7
4,895,240	-		PP_4303	0.78	+0.9
4,895,266	+		PP_4303	0.82	+1.4
4,895,267	-		PP_4303	0.82	+0.6
4,895,267	-		PP_4303	0.82	-0.2
4,895,267	-		PP_4303	0.82	-0.5
4,895,267	-		PP_4303	0.82	+1.7
4,895,348	+				-1.6
4,895,348	+				-0.5
4,895,348	+				+0.6
4,895,349	-				+5.3
4,895,349	-				+0.6
4,895,349	-				-3.3
4,895,350	+				+0.7
4,895,350	+				-0.1
4,895,350	+				-1.8
4,895,350	+				+0.5
4,895,350	+				+0.2
4,895,350	+				+0.5
4,895,351	-				+0.1
4,895,351	-				+0.9
4,895,351	-				+2.4
4,895,351	-				+1.7
4,895,351	-				+0.6
4,895,351	-				+0.1
4,895,389	-				+0.6
4,895,432	+				-1.3
4,895,458	+				+0.4
4,895,459	-				+0.7
4,895,512	+				-1.9
4,895,513	-				+1.4
4,895,525	+				-1.2
4,895,526	-				-0.8
4,895,565	+				+1.3
4,895,566	-				+1.7
4,895,702	+		PP_4304	0.19	-1.0
4,895,759	+		PP_4304	0.26	+3.1
4,895,759	+		PP_4304	0.26	+0.9
4,895,759	+		PP_4304	0.26	+0.8
4,895,760	-		PP_4304	0.26	-0.0
4,895,760	-		PP_4304	0.26	-0.1
4,895,760	-		PP_4304	0.26	-1.4
4,895,760	-		PP_4304	0.26	-1.7
4,895,760	-		PP_4304	0.26	-0.4
4,895,760	-		PP_4304	0.26	-2.0
4,895,760	-		PP_4304	0.26	-1.3
4,895,774	+		PP_4304	0.28	+1.6
4,895,774	+		PP_4304	0.28	-1.6
4,895,775	-		PP_4304	0.28	+2.7
4,895,799	-		PP_4304	0.31	+2.4
4,895,813	+		PP_4304	0.32	-1.2
4,895,814	-		PP_4304	0.33	+2.4
4,895,861	+		PP_4304	0.38	-2.5
4,895,865	-		PP_4304	0.39	-1.2
4,895,865	-		PP_4304	0.39	-1.8
4,895,865	-		PP_4304	0.39	-1.8
4,895,865	-		PP_4304	0.39	-1.4
4,895,880	-		PP_4304	0.41	+1.3
4,895,926	-		PP_4304	0.46	+0.1
4,895,926	-		PP_4304	0.46	-2.7
4,895,961	-		PP_4304	0.50	+1.9
4,895,961	-		PP_4304	0.50	+0.6
4,896,053	+		PP_4304	0.62	+1.3
4,896,054	-		PP_4304	0.62	-0.2
4,896,082	+		PP_4304	0.65	-0.5
4,896,104	+		PP_4304	0.68	+0.6
4,896,104	+		PP_4304	0.68	-0.5
4,896,104	+		PP_4304	0.68	+0.0
4,896,105	-		PP_4304	0.68	-0.8
4,896,105	-		PP_4304	0.68	+1.0
4,896,105	-		PP_4304	0.68	+3.4
4,896,203	+		PP_4304	0.80	+0.9
4,896,235	+		PP_4304	0.84	-1.9
4,896,369	-				+0.3
4,896,395	+				-0.7