Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3557 and PP_3558 are separated by 94 nucleotides PP_3558 and PP_3559 overlap by 4 nucleotides PP_3559 and PP_3560 are separated by 93 nucleotides
PP_3557: PP_3557 - Methyl-accepting chemotaxis transducer, at 4,034,950 to 4,037,094
_3557
PP_3558: PP_3558 - putative Amino acid transporter, periplasmic amino acid-binding protein, at 4,037,189 to 4,038,205
_3558
PP_3559: PP_3559 - glycine betaine ABC transporter (permease), at 4,038,202 to 4,039,050
_3559
PP_3560: PP_3560 - Transcriptional regulator, LysR family, at 4,039,144 to 4,040,007
_3560
Position (kb) 4037
4038
4039 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4036.351 kb on + strand, within PP_3557 at 4036.371 kb on - strand, within PP_3557 at 4036.550 kb on + strand, within PP_3557 at 4036.550 kb on + strand, within PP_3557 at 4037.145 kb on + strand at 4037.146 kb on - strand at 4037.186 kb on + strand at 4037.281 kb on + strand at 4037.512 kb on + strand, within PP_3558 at 4037.552 kb on + strand, within PP_3558 at 4037.552 kb on + strand, within PP_3558 at 4037.552 kb on + strand, within PP_3558 at 4037.552 kb on + strand, within PP_3558 at 4037.736 kb on - strand, within PP_3558 at 4037.753 kb on + strand, within PP_3558 at 4037.754 kb on - strand, within PP_3558 at 4037.754 kb on - strand, within PP_3558 at 4037.754 kb on - strand, within PP_3558 at 4037.754 kb on - strand, within PP_3558 at 4037.754 kb on - strand, within PP_3558 at 4037.838 kb on - strand, within PP_3558 at 4037.838 kb on - strand, within PP_3558 at 4037.838 kb on - strand, within PP_3558 at 4037.870 kb on + strand, within PP_3558 at 4038.014 kb on + strand, within PP_3558 at 4038.015 kb on - strand, within PP_3558 at 4038.045 kb on + strand, within PP_3558 at 4038.046 kb on - strand, within PP_3558 at 4038.275 kb on + strand at 4038.276 kb on - strand at 4038.276 kb on - strand at 4038.284 kb on - strand at 4038.542 kb on + strand, within PP_3559 at 4038.543 kb on - strand, within PP_3559 at 4038.634 kb on + strand, within PP_3559 at 4038.700 kb on + strand, within PP_3559 at 4038.700 kb on + strand, within PP_3559 at 4038.701 kb on - strand, within PP_3559 at 4039.030 kb on + strand at 4039.038 kb on + strand at 4039.039 kb on - strand at 4039.039 kb on - strand at 4039.109 kb on - strand at 4039.109 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs remove 4,036,351 + PP_3557 0.65 -2.1 4,036,371 - PP_3557 0.66 -0.5 4,036,550 + PP_3557 0.75 -0.6 4,036,550 + PP_3557 0.75 -2.2 4,037,145 + +0.3 4,037,146 - -2.4 4,037,186 + +0.7 4,037,281 + +0.3 4,037,512 + PP_3558 0.32 -1.4 4,037,552 + PP_3558 0.36 +0.7 4,037,552 + PP_3558 0.36 -2.6 4,037,552 + PP_3558 0.36 -2.2 4,037,552 + PP_3558 0.36 +0.8 4,037,736 - PP_3558 0.54 -3.5 4,037,753 + PP_3558 0.55 +1.1 4,037,754 - PP_3558 0.56 +0.8 4,037,754 - PP_3558 0.56 -0.4 4,037,754 - PP_3558 0.56 +1.1 4,037,754 - PP_3558 0.56 +0.6 4,037,754 - PP_3558 0.56 +1.3 4,037,838 - PP_3558 0.64 +1.7 4,037,838 - PP_3558 0.64 +3.3 4,037,838 - PP_3558 0.64 +0.6 4,037,870 + PP_3558 0.67 -1.9 4,038,014 + PP_3558 0.81 -1.5 4,038,015 - PP_3558 0.81 +1.7 4,038,045 + PP_3558 0.84 -0.5 4,038,046 - PP_3558 0.84 +0.9 4,038,275 + +1.6 4,038,276 - +1.7 4,038,276 - +0.5 4,038,284 - +0.3 4,038,542 + PP_3559 0.40 -2.2 4,038,543 - PP_3559 0.40 +1.3 4,038,634 + PP_3559 0.51 +0.3 4,038,700 + PP_3559 0.59 -0.2 4,038,700 + PP_3559 0.59 -0.6 4,038,701 - PP_3559 0.59 +1.7 4,039,030 + -3.4 4,039,038 + +0.4 4,039,039 - -0.1 4,039,039 - -2.6 4,039,109 - +0.7 4,039,109 - -0.4
Or see this region's nucleotide sequence