Strain Fitness in Pseudomonas putida KT2440 around PP_1889

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
2,128,708	+		PP_1888	0.14	-1.4
2,128,718	+		PP_1888	0.15	-0.9
2,128,719	-		PP_1888	0.15	-0.2
2,128,719	-		PP_1888	0.15	+0.7
2,128,719	-		PP_1888	0.15	-3.8
2,128,719	-				+0.4
2,128,731	+		PP_1888	0.16	+0.9
2,128,731	+		PP_1888	0.16	-1.6
2,128,731	+		PP_1888	0.16	+1.6
2,128,732	-		PP_1888	0.16	+1.9
2,128,732	-		PP_1888	0.16	+0.2
2,128,735	+		PP_1888	0.17	+1.5
2,128,735	+		PP_1888	0.17	-1.1
2,128,735	+		PP_1888	0.17	+1.1
2,128,735	+		PP_1888	0.17	-0.7
2,128,735	+		PP_1888	0.17	-0.3
2,128,736	-		PP_1888	0.17	+0.7
2,128,736	-		PP_1888	0.17	-2.7
2,128,736	-		PP_1888	0.17	+0.9
2,128,736	-		PP_1888	0.17	+0.6
2,128,736	-		PP_1888	0.17	-0.9
2,128,831	-		PP_1888	0.25	+0.2
2,129,021	+		PP_1888	0.43	+0.9
2,129,021	+		PP_1888	0.43	+0.3
2,129,022	-		PP_1888	0.43	-2.8
2,129,071	+		PP_1888	0.47	-1.8
2,129,177	+		PP_1888	0.57	+0.2
2,129,177	+		PP_1888	0.57	+1.9
2,129,177	+		PP_1888	0.57	-3.1
2,129,181	-		PP_1888	0.57	+1.4
2,129,344	+		PP_1888	0.72	+0.1
2,129,388	-		PP_1888	0.76	+1.0
2,129,388	-		PP_1888	0.76	+0.3
2,129,486	+		PP_1888	0.85	+1.2
2,129,486	+		PP_1888	0.85	-1.6
2,129,486	+		PP_1888	0.85	-3.0
2,129,486	+		PP_1888	0.85	+0.6
2,129,486	+		PP_1888	0.85	+0.7
2,129,486	+		PP_1888	0.85	-0.5
2,129,487	-		PP_1888	0.85	-1.4
2,129,487	-		PP_1888	0.85	+0.7
2,129,487	-		PP_1888	0.85	-0.1
2,129,680	-				+1.2
2,129,704	+				+0.5
2,129,705	-				-1.7
2,129,705	-				-1.4
2,129,705	-				+1.6
2,129,705	-				+1.2
2,129,708	+				-1.6
2,129,708	+				-2.4
2,129,708	+				+0.1
2,129,709	-				+1.8
2,129,709	-				-0.2
2,129,709	-				+0.3
2,129,709	-				-2.0
2,129,844	+				-0.3
2,129,946	+				+1.9
2,129,946	+				-1.6
2,129,946	+				-1.4
2,129,947	-				-0.2
2,130,275	-		PP_1889	0.23	-3.4
2,130,275	-		PP_1889	0.23	+1.9
2,130,293	-		PP_1889	0.24	-3.0
2,130,313	+		PP_1889	0.24	+1.6
2,130,385	+		PP_1889	0.27	+0.9
2,130,385	+		PP_1889	0.27	+3.7
2,130,386	-		PP_1889	0.27	+1.8
2,130,436	+		PP_1889	0.29	+0.5
2,130,498	+		PP_1889	0.32	+0.6
2,130,571	+		PP_1889	0.35	-1.0
2,130,571	+		PP_1889	0.35	-1.4
2,130,571	+		PP_1889	0.35	-0.0
2,130,571	+		PP_1889	0.35	-0.5
2,130,572	-		PP_1889	0.35	+0.3
2,130,572	-		PP_1889	0.35	-0.5
2,130,576	+		PP_1889	0.35	-0.4
2,130,576	+		PP_1889	0.35	-1.5
2,130,577	-		PP_1889	0.35	+3.0
2,130,577	-		PP_1889	0.35	+0.2
2,130,577	-		PP_1889	0.35	-0.9
2,130,577	-		PP_1889	0.35	-2.5
2,130,611	-		PP_1889	0.36	+1.0
2,130,640	+		PP_1889	0.38	+0.5
2,130,737	+		PP_1889	0.41	+0.7
2,130,737	+		PP_1889	0.41	+0.0
2,130,737	+		PP_1889	0.41	-1.5
2,130,738	-		PP_1889	0.41	-0.2
2,130,738	-		PP_1889	0.41	-0.6
2,130,781	+		PP_1889	0.43	+0.6
2,130,797	-		PP_1889	0.44	-0.3
2,130,847	+		PP_1889	0.46	+1.6
2,130,848	-		PP_1889	0.46	+0.9
2,130,848	-		PP_1889	0.46	+0.5
2,130,918	+		PP_1889	0.49	+2.5
2,130,919	-		PP_1889	0.49	+0.9
2,130,959	+		PP_1889	0.50	+2.2
2,130,959	+		PP_1889	0.50	+0.7
2,130,960	-		PP_1889	0.50	-0.0
2,130,960	-		PP_1889	0.50	+1.7
2,131,010	-		PP_1889	0.52	-0.1
2,131,090	+		PP_1889	0.56	-0.6
2,131,091	-		PP_1889	0.56	-0.5
2,131,091	-		PP_1889	0.56	-1.6
2,131,111	+		PP_1889	0.56	+0.6
2,131,112	-		PP_1889	0.56	-0.4
2,131,120	-		PP_1889	0.57	+2.1
2,131,153	+		PP_1889	0.58	+1.4
2,131,226	+		PP_1889	0.61	-2.2
2,131,247	-		PP_1889	0.62	-0.5
2,131,247	-		PP_1889	0.62	+2.4
2,131,264	+		PP_1889	0.63	-1.6
2,131,265	-		PP_1889	0.63	-2.7
2,131,265	-		PP_1889	0.63	+2.1
2,131,265	-		PP_1889	0.63	-2.7
2,131,265	-				+1.6
2,131,273	+		PP_1889	0.63	+0.5
2,131,401	+		PP_1889	0.68	+2.3
2,131,402	-		PP_1889	0.68	-4.1
2,131,473	+		PP_1889	0.71	+1.3
2,131,476	-		PP_1889	0.71	-3.4
2,131,489	+		PP_1889	0.72	-1.0
2,131,489	+		PP_1889	0.72	+2.3
2,131,490	-		PP_1889	0.72	+0.6
2,131,577	+		PP_1889	0.75	+0.1
2,131,578	-		PP_1889	0.75	+0.2
2,131,591	+		PP_1889	0.76	-3.1
2,131,609	+		PP_1889	0.76	+0.1
2,131,654	+		PP_1889	0.78	+0.3
2,131,654	+		PP_1889	0.78	+0.1
2,131,654	+		PP_1889	0.78	-1.7
2,131,655	-		PP_1889	0.78	-1.5
2,131,655	-		PP_1889	0.78	+0.4
2,131,655	-		PP_1889	0.78	+0.7
2,131,968	+				-1.7
2,131,968	+				-1.2
2,131,968	+				+0.5
2,131,968	+				-2.8
2,131,968	+				+0.2
2,132,104	+				+0.1
2,132,168	+				-1.2
2,132,169	-				-0.2
2,132,169	-				-0.6
2,132,181	+				+0.2
2,132,182	-				+1.3
2,132,182	-				-1.7
2,132,233	+				-0.2
2,132,233	+				-2.0
2,132,233	+				-1.0
2,132,233	+				+0.4
2,132,234	-				+1.3
2,132,234	-				+1.6
2,132,234	-				+1.4
2,132,234	-				+1.0
2,132,281	+				-2.6
2,132,281	+				-1.1
2,132,282	-				-0.7
2,132,480	+		PP_1890	0.32	+0.1
2,132,484	+		PP_1890	0.32	-0.2
2,132,484	+		PP_1890	0.32	+0.0
2,132,485	-		PP_1890	0.32	+3.7
2,132,485	-		PP_1890	0.32	-0.6
2,132,485	-		PP_1890	0.32	+0.7
2,132,551	+		PP_1890	0.41	-0.5
2,132,759	+		PP_1890	0.68	-0.7
2,132,759	+		PP_1890	0.68	-0.6
2,132,777	+		PP_1890	0.70	+1.2
2,132,778	-		PP_1890	0.70	+1.1
2,132,800	+		PP_1890	0.73	-0.6
2,132,800	+		PP_1890	0.73	+0.2
2,132,800	+		PP_1890	0.73	-0.8
2,132,800	+		PP_1890	0.73	+2.4
2,132,801	-		PP_1890	0.73	+0.9
2,132,801	-		PP_1890	0.73	+0.5
2,132,837	+		PP_1890	0.78	+1.0
2,132,878	-		PP_1890	0.83	-0.7
2,132,878	-		PP_1890	0.83	-1.3
2,132,912	+		PP_1890	0.87	-0.2
2,133,015	+				+1.1
2,133,016	-				-1.5
2,133,016	-				-1.6
2,133,056	+				+2.7
2,133,062	+				+1.4
2,133,062	+				+2.2
2,133,066	+				-0.5
2,133,066	+				+0.2
2,133,066	+				-0.5
2,133,066	+				+0.6
2,133,067	-				+0.4
2,133,067	-				-0.4
2,133,084	+				-0.8
2,133,084	+				-1.1
2,133,085	-				-1.7
2,133,085	-				+0.3
2,133,138	+		PP_1891	0.14	-1.1
2,133,138	+		PP_1891	0.14	-0.6
2,133,138	+		PP_1891	0.14	-0.4
2,133,139	-		PP_1891	0.14	-0.7
2,133,139	-		PP_1891	0.14	+2.4
2,133,141	+		PP_1891	0.14	-0.5
2,133,142	-		PP_1891	0.14	-2.4