Strain Fitness in Pseudomonas putida KT2440 around PP_1341

Experiment: Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1339 and PP_1340 are separated by 5 nucleotidesPP_1340 and PP_1341 are separated by 14 nucleotidesPP_1341 and PP_1342 are separated by 55 nucleotides PP_1339: PP_1339 - D-alanine--D-alanine ligase B, at 1,525,814 to 1,526,770 _1339 PP_1340: PP_1340 - Cell division protein FtsQ, at 1,526,776 to 1,527,645 _1340 PP_1341: PP_1341 - essential cell division protein FtsA, at 1,527,660 to 1,528,922 _1341 PP_1342: PP_1342 - Cell division protein FtsZ, at 1,528,978 to 1,530,174 _1342 Position (kb) 1527 1528 1529Strain fitness (log2 ratio) -3 -2 -1 0 1at 1526.768 kb on + strandat 1526.768 kb on + strandat 1526.771 kb on + strandat 1528.920 kb on + strandat 1528.935 kb on + strandat 1528.941 kb on + strandat 1528.954 kb on + strandat 1528.964 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs
remove
1,526,768 + +0.9
1,526,768 + -2.3
1,526,771 + -1.8
1,528,920 + -1.7
1,528,935 + -1.1
1,528,941 + -3.2
1,528,954 + -1.6
1,528,964 + +1.7

Or see this region's nucleotide sequence